Random projection

Random projection

In mathematics and statistics, random projection is a technique used to reduce the dimensionality of a set of points which lie in Euclidean space. According to theoretical results, random projection preserves distances well, but empirical results are sparse. They have been applied to many natural language tasks under the name random indexing. == Dimensionality reduction == Dimensionality reduction, as the name suggests, is reducing the number of random variables using various mathematical methods from statistics and machine learning. Dimensionality reduction is often used to reduce the problem of managing and manipulating large data sets. Dimensionality reduction techniques generally use linear transformations in determining the intrinsic dimensionality of the manifold as well as extracting its principal directions. For this purpose there are various related techniques, including: principal component analysis, linear discriminant analysis, canonical correlation analysis, discrete cosine transform, random projection, etc. Random projection is a simple and computationally efficient way to reduce the dimensionality of data by trading a controlled amount of error for faster processing times and smaller model sizes. The dimensions and distribution of random projection matrices are controlled so as to approximately preserve the pairwise distances between any two samples of the dataset. == Method == The core idea behind random projection is given in the Johnson-Lindenstrauss lemma, which states that if points in a vector space are of sufficiently high dimension, then they may be projected into a suitable lower-dimensional space in a way which approximately preserves pairwise distances between the points with high probability. In random projection, the original d {\displaystyle d} -dimensional data is projected to a k {\displaystyle k} -dimensional subspace, by multiplying on the left by a random matrix R ∈ R k × d {\displaystyle R\in \mathbb {R} ^{k\times d}} . Using matrix notation: If X d × N {\displaystyle X_{d\times N}} is the original set of N d-dimensional observations, then X k × N R P = R k × d X d × N {\displaystyle X_{k\times N}^{RP}=R_{k\times d}X_{d\times N}} is the projection of the data onto a lower k-dimensional subspace. Random projection is computationally simple: form the random matrix "R" and project the d × N {\displaystyle d\times N} data matrix X onto K dimensions of order O ( d k N ) {\displaystyle O(dkN)} . If the data matrix X is sparse with about c nonzero entries per column, then the complexity of this operation is of order O ( c k N ) {\displaystyle O(ckN)} . === Orthogonal random projection === A unit vector can be orthogonally projected to a random subspace. Let u {\displaystyle u} be the original unit vector, and let v {\displaystyle v} be its projection. The norm-squared ‖ v ‖ 2 2 {\displaystyle \|v\|_{2}^{2}} has the same distribution as projecting a random point, uniformly sampled on the unit sphere, to its first k {\displaystyle k} coordinates. This is equivalent to sampling a random point in the multivariate gaussian distribution x ∼ N ( 0 , I d × d ) {\displaystyle x\sim {\mathcal {N}}(0,I_{d\times d})} , then normalizing it. Therefore, ‖ v ‖ 2 2 {\displaystyle \|v\|_{2}^{2}} has the same distribution as ∑ i = 1 k x i 2 ∑ i = 1 k x i 2 + ∑ i = k + 1 d x i 2 {\displaystyle {\frac {\sum _{i=1}^{k}x_{i}^{2}}{\sum _{i=1}^{k}x_{i}^{2}+\sum _{i=k+1}^{d}x_{i}^{2}}}} , which by the chi-squared construction of the Beta distribution, has distribution Beta ⁡ ( k / 2 , ( d − k ) / 2 ) {\displaystyle \operatorname {Beta} (k/2,(d-k)/2)} , with mean k / d {\displaystyle k/d} . We have a concentration inequality P r [ | ‖ v ‖ 2 − k d | ≥ ϵ k d ] ≤ 3 exp ⁡ ( − k ϵ 2 / 64 ) {\displaystyle Pr\left[\left|\|v\|_{2}-{\frac {k}{d}}\right|\geq \epsilon {\sqrt {\frac {k}{d}}}\right]\leq 3\exp \left(-k\epsilon ^{2}/64\right)} for any ϵ ∈ ( 0 , 1 ) {\displaystyle \epsilon \in (0,1)} . === Gaussian random projection === The random matrix R can be generated using a Gaussian distribution. The first row is a random unit vector uniformly chosen from S d − 1 {\displaystyle S^{d-1}} . The second row is a random unit vector from the space orthogonal to the first row, the third row is a random unit vector from the space orthogonal to the first two rows, and so on. In this way of choosing R, and the following properties are satisfied: Spherical symmetry: For any orthogonal matrix A ∈ O ( d ) {\displaystyle A\in O(d)} , RA and R have the same distribution. Orthogonality: The rows of R are orthogonal to each other. Normality: The rows of R are unit-length vectors. === More computationally efficient random projections === Achlioptas has shown that the random matrix can be sampled more efficiently. Either the full matrix can be sampled IID according to R i , j = 3 / k × { + 1 with probability 1 6 0 with probability 2 3 − 1 with probability 1 6 {\displaystyle R_{i,j}={\sqrt {3/k}}\times {\begin{cases}+1&{\text{with probability }}{\frac {1}{6}}\\0&{\text{with probability }}{\frac {2}{3}}\\-1&{\text{with probability }}{\frac {1}{6}}\end{cases}}} or the full matrix can be sampled IID according to R i , j = 1 / k × { + 1 with probability 1 2 − 1 with probability 1 2 {\displaystyle R_{i,j}={\sqrt {1/k}}\times {\begin{cases}+1&{\text{with probability }}{\frac {1}{2}}\\-1&{\text{with probability }}{\frac {1}{2}}\end{cases}}} Both are efficient for database applications because the computations can be performed using integer arithmetic. More related study is conducted in. It was later shown how to use integer arithmetic while making the distribution even sparser, having very few nonzeroes per column, in work on the Sparse JL Transform. This is advantageous since a sparse embedding matrix means being able to project the data to lower dimension even faster. === Random Projection with Quantization === Random projection can be further condensed by quantization (discretization), with 1-bit (sign random projection) or multi-bits. It is the building block of SimHash, RP tree, and other memory efficient estimation and learning methods. == Large quasiorthogonal bases == The Johnson-Lindenstrauss lemma states that large sets of vectors in a high-dimensional space can be linearly mapped in a space of much lower (but still high) dimension n with approximate preservation of distances. One of the explanations of this effect is the exponentially high quasiorthogonal dimension of n-dimensional Euclidean space. There are exponentially large (in dimension n) sets of almost orthogonal vectors (with small value of inner products) in n–dimensional Euclidean space. This observation is useful in indexing of high-dimensional data. Quasiorthogonality of large random sets is important for methods of random approximation in machine learning. In high dimensions, exponentially large numbers of randomly and independently chosen vectors from equidistribution on a sphere (and from many other distributions) are almost orthogonal with probability close to one. This implies that in order to represent an element of such a high-dimensional space by linear combinations of randomly and independently chosen vectors, it may often be necessary to generate samples of exponentially large length if we use bounded coefficients in linear combinations. On the other hand, if coefficients with arbitrarily large values are allowed, the number of randomly generated elements that are sufficient for approximation is even less than dimension of the data space. == Implementations == RandPro - An R package for random projection sklearn.random_projection - A module for random projection from the scikit-learn Python library Weka implementation [1]

Shape context

Shape context is a feature descriptor used in object recognition. Serge Belongie and Jitendra Malik proposed the term in their paper "Matching with Shape Contexts" in 2000. == Theory == The shape context is intended to be a way of describing shapes that allows for measuring shape similarity and the recovering of point correspondences. The basic idea is to pick n points on the contours of a shape. For each point pi on the shape, consider the n − 1 vectors obtained by connecting pi to all other points. The set of all these vectors is a rich description of the shape localized at that point but is far too detailed. The key idea is that the distribution over relative positions is a robust, compact, and highly discriminative descriptor. So, for the point pi, the coarse histogram of the relative coordinates of the remaining n − 1 points, h i ( k ) = # { q ≠ p i : ( q − p i ) ∈ bin ( k ) } {\displaystyle h_{i}(k)=\#\{q\neq p_{i}:(q-p_{i})\in {\mbox{bin}}(k)\}} is defined to be the shape context of p i {\displaystyle p_{i}} . The bins are normally taken to be uniform in log-polar space. The fact that the shape context is a rich and discriminative descriptor can be seen in the figure below, in which the shape contexts of two different versions of the letter "A" are shown. (a) and (b) are the sampled edge points of the two shapes. (c) is the diagram of the log-polar bins used to compute the shape context. (d) is the shape context for the point marked with a circle in (a), (e) is that for the point marked as a diamond in (b), and (f) is that for the triangle. As can be seen, since (d) and (e) are the shape contexts for two closely related points, they are quite similar, while the shape context in (f) is very different. For a feature descriptor to be useful, it needs to have certain invariances. In particular it needs to be invariant to translation, scaling, small perturbations, and, depending on the application, rotation. Translational invariance comes naturally to shape context. Scale invariance is obtained by normalizing all radial distances by the mean distance α {\displaystyle \alpha } between all the point pairs in the shape although the median distance can also be used. Shape contexts are empirically demonstrated to be robust to deformations, noise, and outliers using synthetic point set matching experiments. One can provide complete rotational invariance in shape contexts. One way is to measure angles at each point relative to the direction of the tangent at that point (since the points are chosen on edges). This results in a completely rotationally invariant descriptor. But of course this is not always desired since some local features lose their discriminative power if not measured relative to the same frame. Many applications in fact forbid rotational invariance e.g. distinguishing a "6" from a "9". == Use in shape matching == A complete system that uses shape contexts for shape matching consists of the following steps (which will be covered in more detail in the Details of Implementation section): Randomly select a set of points that lie on the edges of a known shape and another set of points on an unknown shape. Compute the shape context of each point found in step 1. Match each point from the known shape to a point on an unknown shape. To minimize the cost of matching, first choose a transformation (e.g. affine, thin plate spline, etc.) that warps the edges of the known shape to the unknown (essentially aligning the two shapes). Then select the point on the unknown shape that most closely corresponds to each warped point on the known shape. Calculate the "shape distance" between each pair of points on the two shapes. Use a weighted sum of the shape context distance, the image appearance distance, and the bending energy (a measure of how much transformation is required to bring the two shapes into alignment). To identify the unknown shape, use a nearest-neighbor classifier to compare its shape distance to shape distances of known objects. == Details of implementation == === Step 1: Finding a list of points on shape edges === The approach assumes that the shape of an object is essentially captured by a finite subset of the points on the internal or external contours on the object. These can be simply obtained using the Canny edge detector and picking a random set of points from the edges. Note that these points need not and in general do not correspond to key-points such as maxima of curvature or inflection points. It is preferable to sample the shape with roughly uniform spacing, though it is not critical. === Step 2: Computing the shape context === This step is described in detail in the Theory section. === Step 3: Computing the cost matrix === Consider two points p and q that have normalized K-bin histograms (i.e. shape contexts) g(k) and h(k). As shape contexts are distributions represented as histograms, it is natural to use the χ2 test statistic as the "shape context cost" of matching the two points: C S = 1 2 ∑ k = 1 K [ g ( k ) − h ( k ) ] 2 g ( k ) + h ( k ) {\displaystyle C_{S}={\frac {1}{2}}\sum _{k=1}^{K}{\frac {[g(k)-h(k)]^{2}}{g(k)+h(k)}}} The values of this range from 0 to 1. In addition to the shape context cost, an extra cost based on the appearance can be added. For instance, it could be a measure of tangent angle dissimilarity (particularly useful in digit recognition): C A = 1 2 ‖ ( cos ⁡ ( θ 1 ) sin ⁡ ( θ 1 ) ) − ( cos ⁡ ( θ 2 ) sin ⁡ ( θ 2 ) ) ‖ {\displaystyle C_{A}={\frac {1}{2}}{\begin{Vmatrix}{\dbinom {\cos(\theta _{1})}{\sin(\theta _{1})}}-{\dbinom {\cos(\theta _{2})}{\sin(\theta _{2})}}\end{Vmatrix}}} This is half the length of the chord in unit circle between the unit vectors with angles θ 1 {\displaystyle \theta _{1}} and θ 2 {\displaystyle \theta _{2}} . Its values also range from 0 to 1. Now the total cost of matching the two points could be a weighted-sum of the two costs: C = ( 1 − β ) C S + β C A {\displaystyle C=(1-\beta )C_{S}+\beta C_{A}\!\,} Now for each point pi on the first shape and a point qj on the second shape, calculate the cost as described and call it Ci,j. This is the cost matrix. === Step 4: Finding the matching that minimizes total cost === Now, a one-to-one matching π ( i ) {\displaystyle \pi (i)} that matches each point pi on shape 1 and qj on shape 2 that minimizes the total cost of matching, H ( π ) = ∑ i C ( p i , q π ( i ) ) {\displaystyle H(\pi )=\sum _{i}C\left(p_{i},q_{\pi (i)}\right)} is needed. This can be done in O ( N 3 ) {\displaystyle O(N^{3})} time using the Hungarian method, although there are more efficient algorithms. To have robust handling of outliers, one can add "dummy" nodes that have a constant but reasonably large cost of matching to the cost matrix. This would cause the matching algorithm to match outliers to a "dummy" if there is no real match. === Step 5: Modeling transformation === Given the set of correspondences between a finite set of points on the two shapes, a transformation T : R 2 → R 2 {\displaystyle T:\mathbb {R} ^{2}\to \mathbb {R} ^{2}} can be estimated to map any point from one shape to the other. There are several choices for this transformation, described below. ==== Affine ==== The affine model is a standard choice: T ( p ) = A p + o {\displaystyle T(p)=Ap+o\!} . The least squares solution for the matrix A {\displaystyle A} and the translational offset vector o is obtained by: o = 1 n ∑ i = 1 n ( p i − q π ( i ) ) , A = ( Q + P ) t {\displaystyle o={\frac {1}{n}}\sum _{i=1}^{n}\left(p_{i}-q_{\pi (i)}\right),A=(Q^{+}P)^{t}} Where P = ( 1 p 11 p 12 ⋮ ⋮ ⋮ 1 p n 1 p n 2 ) {\displaystyle P={\begin{pmatrix}1&p_{11}&p_{12}\\\vdots &\vdots &\vdots \\1&p_{n1}&p_{n2}\end{pmatrix}}} with a similar expression for Q {\displaystyle Q\!} . Q + {\displaystyle Q^{+}\!} is the pseudoinverse of Q {\displaystyle Q\!} . ==== Thin plate spline ==== The thin plate spline (TPS) model is the most widely used model for transformations when working with shape contexts. A 2D transformation can be separated into two TPS function to model a coordinate transform: T ( x , y ) = ( f x ( x , y ) , f y ( x , y ) ) {\displaystyle T(x,y)=\left(f_{x}(x,y),f_{y}(x,y)\right)} where each of the ƒx and ƒy have the form: f ( x , y ) = a 1 + a x x + a y y + ∑ i = 1 n ω i U ( ‖ ( x i , y i ) − ( x , y ) ‖ ) , {\displaystyle f(x,y)=a_{1}+a_{x}x+a_{y}y+\sum _{i=1}^{n}\omega _{i}U\left({\begin{Vmatrix}(x_{i},y_{i})-(x,y)\end{Vmatrix}}\right),} and the kernel function U ( r ) {\displaystyle U(r)\!} is defined by U ( r ) = r 2 log ⁡ r 2 {\displaystyle U(r)=r^{2}\log r^{2}\!} . The exact details of how to solve for the parameters can be found elsewhere but it essentially involves solving a linear system of equations. The bending energy (a measure of how much transformation is needed to align the points) will also be easily obtained. ==== Regularized TPS ==== The TPS formulation above has exact matching requirement for the pairs of points on the two shapes. For noisy data, it is best to

Object storage

Object storage (also known as object-based storage or blob storage) is a computer data storage approach that manages data as "blobs" or "objects", as opposed to other storage architectures like file systems, which manage data as a file hierarchy, and block storage, which manages data as blocks within sectors and tracks. Each object is typically associated with a variable amount of metadata, and a globally unique identifier. Object storage can be implemented at multiple levels, including the device level (object-storage device), the system level, and the interface level. In each case, object storage seeks to enable capabilities not addressed by other storage architectures, like interfaces that are directly programmable by the application, a namespace that can span multiple instances of physical hardware, and data-management functions like data replication and data distribution at object-level granularity. Object storage systems allow retention of massive amounts of unstructured data in which data is written once and read once (or many times). Object storage is used for purposes such as storing objects like videos and photos on Facebook, songs on Spotify, or files in online collaboration services, such as Dropbox. One of the limitations with object storage is that it is not intended for transactional data, as object storage was not designed to replace NAS file access and sharing; it does not support the locking and sharing mechanisms needed to maintain a single, accurately updated version of a file. == History == === Origins === Jim Starkey coined the term blob working at Digital Equipment Corporation to refer to opaque data entities. The terminology was adopted for Rdb/VMS. Blob is often humorously explained to be an abbreviation for binary large object. According to Starkey, this backronym arose when Terry McKiever, working in marketing at Apollo Computer felt that the term needed to be an abbreviation. McKiever began using the expansion basic large object. This was later eclipsed by the retroactive explanation of blobs as binary large objects. According to Starkey, "Blob don't stand for nothin'." Rejecting the acronym, he explained his motivation behind the coinage, saying, "A blob is the thing that ate Cincinnatti [sic], Cleveland, or whatever", referring to the 1958 science fiction film The Blob. In 1995, research led by Garth Gibson on Network-Attached Secure Disks first promoted the concept of splitting less common operations, like namespace manipulations, from common operations, like reads and writes, to optimize the performance and scale of both. In the same year, a Belgian company – FilePool – was established to build the basis for archiving functions. Object storage was proposed at Gibson's Carnegie Mellon University lab as a research project in 1996. Another key concept was abstracting the writes and reads of data to more flexible data containers (objects). Fine grained access control through object storage architecture was further described by one of the NASD team, Howard Gobioff, who later was one of the inventors of the Google File System. Other related work includes the Coda filesystem project at Carnegie Mellon, which started in 1987, and spawned the Lustre file system. There is also the OceanStore project at UC Berkeley, which started in 1999 and the Logistical Networking project at the University of Tennessee Knoxville, which started in 1998. In 1999, Gibson founded Panasas to commercialize the concepts developed by the NASD team. === Development === Seagate Technology played a central role in the development of object storage. According to the Storage Networking Industry Association (SNIA), "Object storage originated in the late 1990s: Seagate specifications from 1999 Introduced some of the first commands and how operating system effectively removed from consumption of the storage." A preliminary version of the "OBJECT BASED STORAGE DEVICES Command Set Proposal" dated 10/25/1999 was submitted by Seagate as edited by Seagate's Dave Anderson and was the product of work by the National Storage Industry Consortium (NSIC) including contributions by Carnegie Mellon University, Seagate, IBM, Quantum, and StorageTek. This paper was proposed to INCITS T-10 (International Committee for Information Technology Standards) with a goal to form a committee and design a specification based on the SCSI interface protocol. This defined objects as abstracted data, with unique identifiers and metadata, how objects related to file systems, along with many other innovative concepts. Anderson presented many of these ideas at the SNIA conference in October 1999. The presentation revealed an IP Agreement that had been signed in February 1997 between the original collaborators (with Seagate represented by Anderson and Chris Malakapalli) and covered the benefits of object storage, scalable computing, platform independence, and storage management. == Architecture == === Abstraction of storage === One of the design principles of object storage is to abstract some of the lower layers of storage away from the administrators and applications. Thus, data is exposed and managed as objects instead of blocks or (exclusively) files. Objects contain additional descriptive properties which can be used for better indexing or management. Administrators do not have to perform lower-level storage functions like constructing and managing logical volumes to utilize disk capacity or setting RAID levels to deal with disk failure. Object storage also allows the addressing and identification of individual objects by more than just file name and file path. Object storage adds a unique identifier within a bucket, or across the entire system, to support much larger namespaces and eliminate name collisions. === Inclusion of rich custom metadata within the object === Object storage explicitly separates file metadata from data to support additional capabilities. As opposed to fixed metadata in file systems (filename, creation date, type, etc.), object storage provides for full function, custom, object-level metadata in order to: Capture application-specific or user-specific information for better indexing purposes Support data-management policies (e.g. a policy to drive object movement from one storage tier to another) Centralize management of storage across many individual nodes and clusters Optimize metadata storage (e.g. encapsulated, database or key value storage) and caching/indexing (when authoritative metadata is encapsulated with the metadata inside the object) independently from the data storage (e.g. unstructured binary storage) Additionally, in some object-based file-system implementations: The file system clients only contact metadata servers once when the file is opened and then get content directly via object-storage servers (vs. block-based file systems which would require constant metadata access) Data objects can be configured on a per-file basis to allow adaptive stripe width, even across multiple object-storage servers, supporting optimizations in bandwidth and I/O Object-based storage devices (OSD) as well as some software implementations (e.g., DataCore Swarm) manage metadata and data at the storage device level: Instead of providing a block-oriented interface that reads and writes fixed sized blocks of data, data is organized into flexible-sized data containers, called objects Each object has both data (an uninterpreted sequence of bytes) and metadata (an extensible set of attributes describing the object); physically encapsulating both together benefits recoverability. The command interface includes commands to create and delete objects, write bytes and read bytes to and from individual objects, and to set and get attributes on objects Security mechanisms provide per-object and per-command access control === Programmatic data management === Object storage provides programmatic interfaces to allow applications to manipulate data. At the base level, this includes Create, read, update and delete (CRUD) functions for basic read, write and delete operations. Some object storage implementations go further, supporting additional functionality like object/file versioning, object replication, life-cycle management and movement of objects between different tiers and types of storage. Most API implementations are REST-based, allowing the use of many standard HTTP calls. == Implementation == === Cloud storage === The vast majority of cloud storage available in the market leverages an object-storage architecture. Some notable examples are Amazon S3, which debuted in March 2006, Microsoft Azure Blob Storage, IBM Cloud Object Storage, Rackspace Cloud Files (whose code was donated in 2010 to Openstack project and released as OpenStack Swift), and Google Cloud Storage released in May 2010. === Object-based file systems === Some distributed file systems use an object-based architecture, where file metadata is stored in metadata servers and file data is stored i

Master data

Master data represents "data about the business entities that provide context for business transactions". The most commonly found categories of master data are parties (individuals and organisations, and their roles, such as customers, suppliers, employees), products, financial structures (such as ledgers and cost centres) and locational concepts. Master data should be distinguished from reference data. While both provide context for business transactions, reference data is concerned with classification and categorisation, while master data is concerned with business entities. Master data is, by its nature, almost always non-transactional in nature. There exist edge cases where an organization may need to treat certain transactional processes and operations as "master data". This arises, for example, where information about master data entities, such as customers or products, is only contained within transactional data such as orders and receipts and is not housed separately. ISO 8000 is the international standard for data quality and data portability in master data. == Alternative definition == An alternative definition of the term master data is that it represents the business objects that contain the most valuable, agreed upon information shared across an organization. In this sense, it gives context to business activities and transactions, answering questions like who, what, when and how as well as expanding the ability to make sense of these activities through categorizations, groupings and hierarchies. It can cover relatively static reference data, transactional, unstructured, analytical, hierarchical and metadata. What constitutes master data under this definition is therefore not about an essential quality of the data (e.g. it is a business entity that provides context for business transactions), but rather about the context in which the organisation has decided to treat the data. == Externally-defined master data == For most organisations, most or all master data is defined and managed within that organisation. Some master data, however, may be externally defined and managed. This represents the single source of basic business data used across a marketplace, regardless of organisation or location. Thus, it can be used by multiple enterprises within a value chain, facilitating "integration of multiple data sources and literally [putting] everyone in the market on the same page." An example of market master data is the Universal Product Code (UPC) found on consumer products. == Master data management == Curating and managing master data is key to ensuring its quality and thus fitness for purpose. All aspects of an organisation, operational and analytical, are greatly dependent on the quality of an organization's master data. Master Data is therefore the focus of the information technology (IT) discipline of master data management (MDM). Without this discipline in place, organisations commonly encounter difficulties with having multiple versions of "the truth" about a business entity, both within individual applications, and distributed across applications.

Data Science Africa

Data Science Africa (DSA) is a non-profit knowledge sharing professional group that aims at bringing together leading researchers and practitioners working on data science methods or applications relevant to Africa, and providing training on state of the art data science methods to students and others interested in developing practical skills. Since 2013, DSA has been organizing conference, workshops and summer schools on machine learning and data science across East Africa. Facilitators of Summer School and workshops are researchers and practitioners from the academia, private and public institutions across the world. == Summer schools and workshops == The first summer school which started as Gaussian Process Summer School was held at Makerere University in Kampala, Uganda from 6th to 9 August 2013. The First Data Science Summer School and Workshop was held at Dedan Kimathi University of Technology in Nyeri, Kenya from 15th to 19 June 2015. The Second Data Science Summer School was held at Makerere University, Kampala, Uganda from 27th to 29 July 2016, and the workshop was held at Pulse Lab, Kampala, Uganda from 30 July to 1 August 2016. The Third Data Science Summer School and Workshop was held at Nelson Mandela African Institute of Science and Technology, Tanzania from 19th to 21 July 2017. Among the sponsors of the event was ARM

Textual case-based reasoning

Textual case-based reasoning (TCBR) is a subtopic of case-based reasoning, in short CBR, a popular area in artificial intelligence. CBR suggests the ways to use past experiences to solve future similar problems, requiring that past experiences be structured in a form similar to attribute-value pairs. This leads to the investigation of textual descriptions for knowledge exploration whose output will be, in turn, used to solve similar problems. == Subareas == Textual case-base reasoning research has focused on: measuring similarity between textual cases mapping texts into structured case representations adapting textual cases for reuse automatically generating representations.

Two-phase commit protocol

In transaction processing, databases, and computer networking, the two-phase commit protocol (2PC, tupac) is a type of atomic commitment protocol (ACP). It is a distributed algorithm that coordinates all the processes that participate in a distributed atomic transaction on whether to commit or abort (roll back) the transaction. This protocol (a specialised type of consensus protocol) achieves its goal even in many cases of temporary system failure (involving either process, network node, communication, etc. failures), and is thus widely used. However, it is not resilient to all possible failure configurations, and in rare cases, manual intervention is needed to remedy an outcome. To accommodate recovery from failure (automatic in most cases) the protocol's participants use logging of the protocol's states. Log records, which are typically slow to generate but survive failures, are used by the protocol's recovery procedures. Many protocol variants exist that primarily differ in logging strategies and recovery mechanisms. Though usually intended to be used infrequently, recovery procedures compose a substantial portion of the protocol, due to many possible failure scenarios to be considered and supported by the protocol. In a "normal execution" of any single distributed transaction (i.e., when no failure occurs, which is typically the most frequent situation), the protocol consists of two phases: The commit-request phase (or voting phase), in which a coordinator process attempts to prepare all the transaction's participating processes (named participants, cohorts, or workers) to take the necessary steps for either committing or aborting the transaction and to vote, either "Yes": commit (if the transaction participant's local portion execution has ended properly), or "No": abort (if a problem has been detected with the local portion), and The commit phase, in which, based on voting of the participants, the coordinator decides whether to commit (only if all have voted "Yes") or abort the transaction (otherwise), and notifies the result to all the participants. The participants then follow with the needed actions (commit or abort) with their local transactional resources (also called recoverable resources; e.g., database data) and their respective portions in the transaction's other output (if applicable). The two-phase commit (2PC) protocol should not be confused with the two-phase locking (2PL) protocol, a concurrency control protocol. == Assumptions == The protocol works in the following manner: one node is a designated coordinator, which is the master site, and the rest of the nodes in the network are designated the participants. The protocol assumes that: there is stable storage at each node with a write-ahead log, no node crashes forever, the data in the write-ahead log is never lost or corrupted in a crash, and any two nodes can communicate with each other. The last assumption is not too restrictive, as network communication can typically be rerouted. The first two assumptions are much stronger; if a node is totally destroyed then data can be lost. The protocol is initiated by the coordinator after the last step of the transaction has been reached. The participants then respond with an agreement message or an abort message depending on whether the transaction has been processed successfully at the participant. == Basic algorithm == === Commit request (or voting) phase === The coordinator sends a query to commit message to all participants and waits until it has received a reply from all participants. The participants execute the transaction up to the point where they will be asked to commit. They each write an entry to their undo log and an entry to their redo log. Each participant replies with: either an agreement message (participant votes Yes to commit), if the participant's actions succeeded; or an abort message (participant votes No to commit), if the participant experiences a failure that will make it impossible to commit. === Commit (or completion) phase === ==== Success ==== If the coordinator received an agreement message from all participants during the commit-request phase: The coordinator sends a commit message to all the participants. Each participant completes the operation, and releases all the locks and resources held during the transaction. Each participant sends an acknowledgement to the coordinator. The coordinator completes the transaction when all acknowledgements have been received. ==== Failure ==== If any participant votes No during the commit-request phase (or the coordinator's timeout expires): The coordinator sends a rollback message to all the participants. Each participant undoes the transaction using the undo log, and releases the resources and locks held during the transaction. Each participant sends an acknowledgement to the coordinator. The coordinator undoes the transaction when all acknowledgements have been received. ==== Message flow ==== Coordinator Participant QUERY TO COMMIT --------------------------------> VOTE YES/NO prepare/abort <------------------------------- commit/abort COMMIT/ROLLBACK --------------------------------> ACKNOWLEDGEMENT commit/abort <-------------------------------- end An next to the record type means that the record is forced to stable storage. == Disadvantages == The greatest disadvantage of the two-phase commit protocol is that it is a blocking protocol. If the coordinator fails permanently, some participants will never resolve their transactions: After a participant has sent an agreement message as a response to the commit-request message from the coordinator, it will block until a commit or rollback is received. A two-phase commit protocol cannot dependably recover from a failure of both the coordinator and a cohort member during the commit phase. If only the coordinator had failed, and no cohort members had received a commit message, it could safely be inferred that no commit had happened. If, however, both the coordinator and a cohort member failed, it is possible that the failed cohort member was the first to be notified, and had actually done the commit. Even if a new coordinator is selected, it cannot confidently proceed with the operation until it has received an agreement from all cohort members, and hence must block until all cohort members respond. == Implementing the two-phase commit protocol == === Common architecture === In many cases the 2PC protocol is distributed in a computer network. It is easily distributed by implementing multiple dedicated 2PC components similar to each other, typically named transaction managers (TMs; also referred to as 2PC agents or Transaction Processing Monitors), that carry out the protocol's execution for each transaction (e.g., The Open Group's X/Open XA). The databases involved with a distributed transaction, the participants, both the coordinator and participants, register to close TMs (typically residing on respective same network nodes as the participants) for terminating that transaction using 2PC. Each distributed transaction has an ad hoc set of TMs, the TMs to which the transaction participants register. A leader, the coordinator TM, exists for each transaction to coordinate 2PC for it, typically the TM of the coordinator database. However, the coordinator role can be transferred to another TM for performance or reliability reasons. Rather than exchanging 2PC messages among themselves, the participants exchange the messages with their respective TMs. The relevant TMs communicate among themselves to execute the 2PC protocol schema above, "representing" the respective participants, for terminating that transaction. With this architecture the protocol is fully distributed (does not need any central processing component or data structure), and scales up with number of network nodes (network size) effectively. This common architecture is also effective for the distribution of other atomic commitment protocols besides 2PC, since all such protocols use the same voting mechanism and outcome propagation to protocol participants. === Protocol optimizations === Database research has been done on ways to get most of the benefits of the two-phase commit protocol while reducing costs by protocol optimizations and protocol operations saving under certain system's behavior assumptions. ==== Presumed abort and presumed commit ==== Presumed abort or Presumed commit are common such optimizations. An assumption about the outcome of transactions, either commit, or abort, can save both messages and logging operations by the participants during the 2PC protocol's execution. For example, when presumed abort, if during system recovery from failure no logged evidence for commit of some transaction is found by the recovery procedure, then it assumes that the transaction has been aborted, and acts accordingly. This means that it does not matter if aborts are logged at all, and such logging can be saved under this assumption. Typical