Data exchange is the process of moving data from one information system to another. It often involves transforming data that is native to the source system into a form that is consumable by the target system or to a standardized form that is consumable by any compatible system. In particular, data exchange allows data to be shared between computer programs. Data exchange is similar to data integration except that data may be restructured with possible loss of content. There may be no way to transform a particular collection based on exchange constraints. Conversely, there may be multiple ways to transform the data, in which case one option must be identified in order to achieve compatibility between source and target. There are two main types of data exchange: broadcast and peer-to-peer (a.k.a. unicast). For broadcast, data is transmitted simultaneously to all consumers. Just as a conference call, all participants get the same information from the speaker at the same time. For peer-to-peer, data is sent to a single receiver, defined by a specific address. For example, a letter goes to just one mail box. == Single-domain == In some domains, a multiple source and target schema (proprietary data formats) may exist. An exchange or interchange format is often developed for a single domain, and then necessary routines (mappings) are written to (indirectly) transform/translate each and every source schema to each and every target schema by using the interchange format as an intermediate step. That requires less work than writing and debugging the many routines that would be required to directly translate each source schema directly to each target schema. Examples of these transformative interchange formats include: Standard Interchange Format for geospatial data; Data Interchange Format for spreadsheet data; Open Document Format for spreadsheets, charts, presentations and word processing documents; GPS eXchange Format or Keyhole Markup Language for describing GPS data; GDSII for integrated circuit layout. == Representation == A data exchange (a.k.a. interchange) language defines a domain-independent way to represent data. These languages have evolved from being markup and display-oriented to support the encoding of metadata that describes the structural attributes of the information. Practice has shown that certain types of formal languages are better suited for this task than others, since their specification is driven by a formal process instead of particular software implementation. For example, XML is a markup language that was designed to enable the creation of dialects (the definition of domain-specific sublanguages). However, it does not contain domain-specific dictionaries or fact types. Beneficial to a reliable data exchange is the availability of standard dictionaries-taxonomies and tools libraries such as parsers, schema validators, and transformation tools. === XML === The popularity of XML for data exchange on the World Wide Web has several reasons. First of all, it is closely related to the preexisting standards Standard Generalized Markup Language (SGML) and Hypertext Markup Language (HTML), and as such a parser written to support these two languages can be easily extended to support XML as well. For example, XHTML has been defined as a format that is formal XML, but understood correctly by most (if not all) HTML parsers. === YAML === YAML was designed to be human-readable and authored via a text editor with notion similar to reStructuredText and wiki syntax. YAML 1.2 also includes a shorthand notion that is compatible with JSON, and as such any JSON document is also valid YAML; this however does not hold the other way. === REBOL === REBOL was designed to be human-readable and authored via a text editor. It uses a simple free-form syntax with minimal punctuation and a rich set of data types (such as URL, email, date and time, tuple, string, tag) that respect common standards. It is designed to not need any additional meta-language, being designed in a metacircular fashion which is why the parse dialect used for definitions and transformations of REBOL dialects is also itself a dialect of REBOL. REBOL was used as a source of inspiration for JSON. === Gellish === Gellish English is a formalized subset of natural English (language), which includes a simple grammar and a large, extensible dictionary (taxonomy) that defines the general and domain specific terminology, whereas the concepts are arranged in a hierarchy, which supports inheritance of knowledge and requirements. The dictionary also includes standardized fact types. The terms and relation types together can be used to create and interpret expressions of facts, knowledge, requirements and other information. Gellish can be used in combination with SQL, RDF/XML, OWL and various other meta-languages. The Gellish standard is a combination of ISO 10303-221 (AP221) and ISO 15926. === List === The following describes and compares popular data exchange languages. Columns Schemas – Whether supports representing domain specific data structure definition Flexible – Whether supports extension of the semantic expression capabilities without modifying the schema Semantic verification – Whether supports semantic verification of the correctness of expressions in the language Dictionary – Whether includes a dictionary and a taxonomy (hierarchy) of concepts with inheritance Information model – Whether supports an information model Synonyms and homonyms – Whether supports the use of synonyms and homonyms in expressions Dialecting – Whether is available in multiple natural languages or dialects Web standard – Whether is standardized by a recognized body Transformations – Whether includes a translation to other standards Lightweight – Whether a lightweight version is available Human readable – Whether expressions are understandable without training Compatibility – Which other tools can be used or are required
Fatsecret
Fatsecret, commonly styled as fatsecret, is a mobile application, website and API that helps people achieve their weight loss goals and find accurate nutrition information. It also offers a weight loss clinic with coaching and medically supported programs. The platform powers global health apps. == History == Fatsecret was founded in 2006 in Melbourne, Australia by Lenny Moses and Rodney Moses. As of 2019, Lenny serves as the company's CEO. The company is known for its calorie counting and meal tracking app, and by April 2016, the company claimed to have 45 million users of its services. In August 2018, a premium version of its app was released. Since August 2009, the company has operated the Fatsecret Platform API, which allows access to its global food and nutrition database. Fatsecret reportedly had 900,000 downloads of its app in January 2020. In an analysis of several Health & Fitness app subcategories for the United States in January 2021, Fatsecret was reported to have the highest 30 day user retention rate of top Calorie Counter + Meal Planner for Weight Loss apps.
Permutation automaton
In automata theory, a permutation automaton, or pure-group automaton, is a deterministic finite automaton such that each input symbol permutes the set of states. Formally, a deterministic finite automaton A may be defined by the tuple (Q, Σ, δ, q0, F), where Q is the set of states of the automaton, Σ is the set of input symbols, δ is the transition function that takes a state q and an input symbol x to a new state δ(q,x), q0 is the initial state of the automaton, and F is the set of accepting states (also: final states) of the automaton. A is a permutation automaton if and only if, for every two distinct states qi and qj in Q and every input symbol x in Σ, δ(qi,x) ≠ δ(qj,x). A formal language is p-regular (also: a pure-group language) if it is accepted by a permutation automaton. For example, the set of strings of even length forms a p-regular language: it may be accepted by a permutation automaton with two states in which every transition replaces one state by the other. == Applications == The pure-group languages were the first interesting family of regular languages for which the star height problem was proved to be computable. Another mathematical problem on regular languages is the separating words problem, which asks for the size of a smallest deterministic finite automaton that distinguishes between two given words of length at most n – by accepting one word and rejecting the other. The known upper bound in the general case is O ( n 2 / 5 ( log n ) 3 / 5 ) {\displaystyle O(n^{2/5}(\log n)^{3/5})} . The problem was later studied for the restriction to permutation automata. In this case, the known upper bound changes to O ( n 1 / 2 ) {\displaystyle O(n^{1/2})} .
Noémie Elhadad
Noémie Elhadad is an American data scientist who is an associate professor of biomedical informatics at the Columbia University Vagelos College of Physicians and Surgeons. As of 2022, she serves as the chair of the Department of Biomedical Informatics. Her research considers machine learning in bioinformatics, natural language processing and medicine. == Early life and education == Elhadad studied computer software engineering at École nationale supérieure d'électronique, informatique, télécommunications, mathématique et mécanique de Bordeaux (ENSEIRB). She completed her doctoral research at Columbia University. She was based in the Department of Computer Science, where she developed patient-focused text summaries of clinical literature. == Research and career == Elhadad joined the faculty at the City College of New York. In 2007 she joined the Department of Biomedical Informatics at Columbia University. She was made Chair of the Health Analytics Center at the Columbia Data Science Institute in 2013. Her research considers how clinical data, electronic health records and patient-generated data can enhance access to information for researchers, patients and physicians. She developed an artificial intelligence tool that supported patients in the NewYork-Presbyterian Hospital. Elhadad is interested in using data to advance women's health. She led the Citizen Endo Project that looks to comprehensively describe how patients experience endometriosis. It was built using principles of citizen science, using patient testimonials from focus groups in New York City and data aggregation. She created the app, Phendo, which asks patients about their experience of the disease. The name Phendo is a portmanteau of phenotyping endometriosis. Elhadad was announced as chair of the Department of Biomedical Informatics in December 2022. == Selected publications == Caruana, Rich; Lou, Yin; Gehrke, Johannes; Koch, Paul; Sturm, Marc; Elhadad, Noemie (August 10, 2015). "Intelligible Models for HealthCare". Proceedings of the 21th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. New York, NY, USA: ACM. pp. 1721–1730. doi:10.1145/2783258.2788613. ISBN 9781450336642. S2CID 14190268. Chaitanya Shivade; Preethi Raghavan; Eric Fosler-Lussier; Peter J Embi; Noemie Elhadad; Stephen B Johnson; Albert M Lai (November 7, 2013). "A review of approaches to identifying patient phenotype cohorts using electronic health records". Journal of the American Medical Informatics Association. 21 (2): 221–230. doi:10.1136/AMIAJNL-2013-001935. ISSN 1067-5027. PMC 3932460. PMID 24201027. Wikidata Q37598951. Shivade, Chaitanya; Raghavan, Preethi; Fosler-Lussier, Eric; Embi, Peter J; Elhadad, Noemie; Johnson, Stephen B; Lai, Albert M (March 2014). "A review of approaches to identifying patient phenotype cohorts using electronic health records". Journal of the American Medical Informatics Association. 21 (2): 221–230. doi:10.1136/amiajnl-2013-001935. ISSN 1067-5027. PMC 3932460. PMID 24201027. == Personal life == Elhadad suffers from endometriosis.
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IQTELL
IQTELL was a productivity app that allowed users to manage email, tasks, projects, calendars, contacts, Evernotes and more in a single app. IQTELL was available as a web app, as well as an iOS and Android app. All user information was automatically synced between all devices. iOS and Android apps supported offline access. The app could be used to implement concepts and techniques described in the book Getting Things Done by David Allen. == History == IQTELL was created by Ran Flam and released in 2013. In 2014, mobile apps for iOS and Android were released. In 2015, Premium and Platinum subscription plans were introduced (while maintaining the free user version). In April 2017, a new web app was launched. On July 31, 2017, all IQTell services have been closed. == Productivity methods == IQTell was designed to fit in with the Getting Things Done (GTD) productivity methods. Users may have had utilized GTD lists, such as Inbox, Actions, Projects, Someday, Ticklers, and Reference information to process their Inbox items into relevant GTD lists. Using the web app, iOS and/or Android apps, users could deploy macros/shortcuts to quickly process their email. Email was turned into tasks (actions), projects, etc. The original email was removed from the email inbox. The email became a part of the items created (e.g. actions, project, etc.) and could also be viewed in the All Mail folder (if Gmail), or the Archive folder (if non-Gmail). Users had flexibility to use the out-of-the-box macros/shortcuts as well as edit/create additional macros. IQTELL features included email, calendars, contacts, list management, sharing and collaboration with team members. All of the features were compatible with commonly used organization software such as Evernote and iCloud.
Constrained conditional model
A constrained conditional model (CCM) is a machine learning and inference framework that augments the learning of conditional (probabilistic or discriminative) models with declarative constraints. The constraint can be used as a way to incorporate expressive prior knowledge into the model and bias the assignments made by the learned model to satisfy these constraints. The framework can be used to support decisions in an expressive output space while maintaining modularity and tractability of training and inference. Models of this kind have recently attracted much attention within the natural language processing (NLP) community. Formulating problems as constrained optimization problems over the output of learned models has several advantages. It allows one to focus on the modeling of problems by providing the opportunity to incorporate domain-specific knowledge as global constraints using a first order language. Using this declarative framework frees the developer from low level feature engineering while capturing the problem's domain-specific properties and guarantying exact inference. From a machine learning perspective it allows decoupling the stage of model generation (learning) from that of the constrained inference stage, thus helping to simplify the learning stage while improving the quality of the solutions. For example, in the case of generating compressed sentences, rather than simply relying on a language model to retain the most commonly used n-grams in the sentence, constraints can be used to ensure that if a modifier is kept in the compressed sentence, its subject will also be kept. == Motivation == Making decisions in many domains (such as natural language processing and computer vision problems) often involves assigning values to sets of interdependent variables where the expressive dependency structure can influence, or even dictate, what assignments are possible. These settings are applicable not only to Structured Learning problems such as semantic role labeling, but also for cases that require making use of multiple pre-learned components, such as summarization, textual entailment and question answering. In all these cases, it is natural to formulate the decision problem as a constrained optimization problem, with an objective function that is composed of learned models, subject to domain- or problem-specific constraints. Constrained conditional models form a learning and inference framework that augments the learning of conditional (probabilistic or discriminative) models with declarative constraints (written, for example, using a first-order representation) as a way to support decisions in an expressive output space while maintaining modularity and tractability of training and inference. These constraints can express either hard restrictions, completely prohibiting some assignments, or soft restrictions, penalizing unlikely assignments. In most applications of this framework in NLP, following, Integer Linear Programming (ILP) was used as the inference framework, although other algorithms can be used for that purpose. == Formal Definition == Given a set of feature functions { ϕ i ( x , y ) } {\displaystyle \{\phi _{i}(x,y)\}} and a set of constraints { C i ( x , y ) } {\displaystyle \{C_{i}(x,y)\}} , defined over an input structure x ∈ X {\displaystyle x\in X} and an output structure y ∈ Y {\displaystyle y\in Y} , a constraint conditional model is characterized by two weight vectors, w and ρ {\displaystyle \rho } , and is defined as the solution to the following optimization problem: a r g m a x y ∑ i w i ϕ i ( x , y ) − ∑ ρ i C i ( x , y ) {\displaystyle argmax_{y}\sum _{i}w_{i}\phi _{i}(x,y)-\sum \rho _{i}C_{i}(x,y)} . Each constraint C i ∈ C {\displaystyle C_{i}\in C} is a boolean mapping indicating if the joint assignment ( x , y ) {\displaystyle (x,y)} violates a constraint, and ρ {\displaystyle \rho } is the penalty incurred for violating the constraints. Constraints assigned an infinite penalty are known as hard constraints, and represent unfeasible assignments to the optimization problem. == Training paradigms == === Learning local vs. global models === The objective function used by CCMs can be decomposed and learned in several ways, ranging from a complete joint training of the model along with the constraints to completely decoupling the learning and the inference stage. In the latter case, several local models are learned independently and the dependency between these models is considered only at decision time via a global decision process. The advantages of each approach are discussed in which studies the two training paradigms: (1) local models: L+I (learning + inference) and (2) global model: IBT (Inference based training), and shows both theoretically and experimentally that while IBT (joint training) is best in the limit, under some conditions (basically, ”good” components) L+I can generalize better. The ability of CCM to combine local models is especially beneficial in cases where joint learning is computationally intractable or when training data are not available for joint learning. This flexibility distinguishes CCM from the other learning frameworks that also combine statistical information with declarative constraints, such as Markov logic network, that emphasize joint training. === Minimally supervised CCM === CCM can help reduce supervision by using domain knowledge (expressed as constraints) to drive learning. These settings were studied in and. These works introduce semi-supervised Constraints Driven Learning (CODL) and show that by incorporating domain knowledge the performance of the learned model improves significantly. === Learning over latent representations === CCMs have also been applied to latent learning frameworks, where the learning problem is defined over a latent representation layer. Since the notion of a correct representation is inherently ill-defined, no gold-standard labeled data regarding the representation decision is available to the learner. Identifying the correct (or optimal) learning representation is viewed as a structured prediction process and therefore modeled as a CCM. This problem was covered in several papers, in both supervised and unsupervised settings. In all cases research showed that explicitly modeling the interdependencies between representation decisions via constraints results in an improved performance. == Integer linear programming for natural language processing applications == The advantages of the CCM declarative formulation and the availability of off-the-shelf solvers have led to a large variety of natural language processing tasks being formulated within the framework, including semantic role labeling, syntactic parsing, coreference resolution, summarization, transliteration, natural language generation and joint information extraction. Most of these works use an integer linear programming (ILP) solver to solve the decision problem. Although theoretically solving an Integer Linear Program is exponential in the size of the decision problem, in practice using state-of-the-art solvers and approximate inference techniques large scale problems can be solved efficiently. The key advantage of using an ILP solver for solving the optimization problem defined by a constrained conditional model is the declarative formulation used as input for the ILP solver, consisting of a linear objective function and a set of linear constraints. == Resources == CCM Tutorial Predicting Structures in NLP: Constrained Conditional Models and Integer Linear Programming in NLP