Grammatical evolution

Grammatical evolution

Grammatical evolution (GE) is a genetic programming (GP) technique (or approach) from evolutionary computation pioneered by Conor Ryan, JJ Collins and Michael O'Neill in 1998 at the BDS Group in the University of Limerick. As in any other GP approach, the objective is to find an executable program, program fragment, or function, which will achieve a good fitness value for a given objective function. In most published work on GP, a LISP-style tree-structured expression is directly manipulated, whereas GE applies genetic operators to an integer string, subsequently mapped to a program (or similar) through the use of a grammar, which is typically expressed in Backus–Naur form. One of the benefits of GE is that this mapping simplifies the application of search to different programming languages and other structures. == Problem addressed == In type-free, conventional Koza-style GP, the function set must meet the requirement of closure: all functions must be capable of accepting as their arguments the output of all other functions in the function set. Usually, this is implemented by dealing with a single data-type such as double-precision floating point. While modern Genetic Programming frameworks support typing, such type-systems have limitations that Grammatical Evolution does not suffer from. == GE's solution == GE offers a solution to the single-type limitation by evolving solutions according to a user-specified grammar (usually a grammar in Backus-Naur form). Therefore, the search space can be restricted, and domain knowledge of the problem can be incorporated. The inspiration for this approach comes from a desire to separate the "genotype" from the "phenotype": in GP, the objects the search algorithm operates on and what the fitness evaluation function interprets are one and the same. In contrast, GE's "genotypes" are ordered lists of integers which code for selecting rules from the provided context-free grammar. The phenotype, however, is the same as in Koza-style GP: a tree-like structure that is evaluated recursively. This model is more in line with how genetics work in nature, where there is a separation between an organism's genotype and the final expression of phenotype in proteins, etc. Separating genotype and phenotype allows a modular approach. In particular, the search portion of the GE paradigm needn't be carried out by any one particular algorithm or method. Observe that the objects GE performs search on are the same as those used in genetic algorithms. This means, in principle, that any existing genetic algorithm package, such as the popular GAlib, can be used to carry out the search, and a developer implementing a GE system need only worry about carrying out the mapping from list of integers to program tree. It is also in principle possible to perform the search using some other method, such as particle swarm optimization (see the remark below); the modular nature of GE creates many opportunities for hybrids as the problem of interest to be solved dictates. Brabazon and O'Neill have successfully applied GE to predicting corporate bankruptcy, forecasting stock indices, bond credit ratings, and other financial applications. GE has also been used with a classic predator-prey model to explore the impact of parameters such as predator efficiency, niche number, and random mutations on ecological stability. It is possible to structure a GE grammar that for a given function/terminal set is equivalent to genetic programming. == Criticism == Despite its successes, GE has been the subject of some criticism. One issue is that as a result of its mapping operation, GE's genetic operators do not achieve high locality which is a highly regarded property of genetic operators in evolutionary algorithms. == Variants == Although GE was originally described in terms of using an Evolutionary Algorithm, specifically, a Genetic Algorithm, other variants exist. For example, GE researchers have experimented with using particle swarm optimization to carry out the searching instead of genetic algorithms with results comparable to that of normal GE; this is referred to as a "grammatical swarm"; using only the basic PSO model it has been found that PSO is probably equally capable of carrying out the search process in GE as simple genetic algorithms are. (Although PSO is normally a floating-point search paradigm, it can be discretized, e.g., by simply rounding each vector to the nearest integer, for use with GE.) Yet another possible variation that has been experimented with in the literature is attempting to encode semantic information in the grammar in order to further bias the search process. Other work showed that, with biased grammars that leverage domain knowledge, even random search can be used to drive GE. == Related work == GE was originally a combination of the linear representation as used by the Genetic Algorithm for Developing Software (GADS) and Backus Naur Form grammars, which were originally used in tree-based GP by Wong and Leung in 1995 and Whigham in 1996. Other related work noted in the original GE paper was that of Frederic Gruau, who used a conceptually similar "embryonic" approach, as well as that of Keller and Banzhaf, which similarly used linear genomes. == Implementations == There are several implementations of GE. These include the following.

Stereo cameras

The stereo cameras approach is a method of distilling a noisy video signal into a coherent data set that a computer can begin to process into actionable symbolic objects, or abstractions. Stereo cameras is one of many approaches used in the broader fields of computer vision and machine vision. == Calculation == In this approach, two cameras with a known physical relationship (i.e. a common field of view the cameras can see, and how far apart their focal points sit in physical space) are correlated via software. By finding mappings of common pixel values, and calculating how far apart these common areas reside in pixel space, a rough depth map can be created. This is very similar to how the human brain uses stereoscopic information from the eyes to gain depth cue information, i.e. how far apart any given object in the scene is from the viewer. The camera attributes must be known, focal length and distance apart etc., and a calibration done. Once this is completed, the systems can be used to sense the distances of objects by triangulation. Finding the same singular physical point in the two left and right images is known as the correspondence problem. Correctly locating the point gives the computer the capability to calculate the distance that the robot or camera is from the object. On the BH2 Lunar Rover the cameras use five steps: a bayer array filter, photometric consistency dense matching algorithm, a Laplace of Gaussian (LoG) edge detection algorithm, a stereo matching algorithm and finally uniqueness constraint. == Uses == This type of stereoscopic image processing technique is used in applications such as 3D reconstruction, robotic control and sensing, crowd dynamics monitoring and off-planet terrestrial rovers; for example, in mobile robot navigation, tracking, gesture recognition, targeting, 3D surface visualization, immersive and interactive gaming. Although the Xbox Kinect sensor is also able to create a depth map of an image, it uses an infrared camera for this purpose, and does not use the dual-camera technique. Other approaches to stereoscopic sensing include time of flight sensors and ultrasound.

BRS/Search

BRS/Search is a full-text database and information retrieval system. BRS/Search uses a fully inverted indexing system to store, locate, and retrieve unstructured data. It was the search engine that in 1977 powered Bibliographic Retrieval Services (BRS) commercial operations with 20 databases (including the first national commercial availability of MEDLINE); it has changed ownership several times during its development and is currently sold as Livelink ECM Discovery Server by Open Text Corporation. == Early development == Development on what was to become BRS began as Biomedical Communications Network (BCN) at the State University of New York at Albany (SUNY). BCN, which went online in 1968, provided on-line access to nine databases, including MEDLINE and BIOSIS Previews, to large universities and medical schools primarily in the Northeast of the USA. State funding for the project was withdrawn in 1975, and Bibliographic Retrieval Services (BRS) was formed as a non-profit concern the following year. It was incorporated in May 1976 as a for-profit corporation with Ron Quake as president, Jan Egeland as vice president in charge of marketing and training, and Lloyd Palmer as vice president of systems. == BRS commercial operations == In December 1976, the First BRS User Meeting was held in Syracuse, New York, and by January 1977 BRS started commercial operations with 20 databases (including the first national commercial availability of MEDLINE) and 9 million records, using modified IBM STAIRS (STorage And Information Retrieval System) software, Telenet for telecommunications, and timesharing mainframe computers of Carrier Corporation. In October 1980 BRS was sold by Egeland and Quake to Indian Head, Inc., a subsidiary of the Dutch company Thyssen-Bornemisza Group. == 1989–1993 == In 1989 Robert Maxwell acquired BRS and the BRS/Search software; he announced the planned incorporation of the ORBIT Search Service and BRS Information Technologies and renamed the whole group Maxwell Online, Inc. At that time BRS Information Technologies was serving the medical and academic library marketplace with over 150 databases. Maxwell later bought the publishing company Macmillan and put Maxwell Online under Macmillan. In the same year BRS/LINK (hypertext connection of databases; first application delivering full text) was announced. The initial BRS/LINK application "relates the citation in a bibliographic database to its full-text article in a second database," and "eliminates the need to re-execute a search strategy in the second database in order to find the corresponding full-text article." Initially BRS/LINK supported linking only selected bibliographic databases: MEDLINE, Health Planning and Administration, and MEDLINE References on AIDS to the full-text Comprehensive Core Medical Library. At the time of Robert Maxwell’s death in 1991, Macmillan brought in Andrew Gregory to represent the company during the 2 years that Maxwell’s affairs were being settled and to prepare Maxwell Online to be able to sell the components. Maxwell Online shortly thereafter underwent yet another name change, this time to InfoPro Technologies. == Dataware Technologies ownership of BRS/SEARCH == Early in 1994, InfoPro Technologies, a subsidiary of MHC Inc. (holding company for Macmillan Inc.), the former Maxwell Online service, sold off all its subsidiaries. ORBIT Search Services went to the French-owned Questel, the dial-up BRS Search Services to CD Plus Technologies (later to become OVID), and BRS Software Products (including BRS/SEARCH) to Dataware Technologies. Almost up to the end of InfoPro Technologies, BRS Software had been the fastest growing segment of the company. At the 14th BRS North American Users Group Conference in 1999, Dave Schubmehl of Dataware Technologies presented a paper in which he stated "The purpose of this presentation is to update BRS users on upcoming releases of BRS/Search, NetAnswer, and other Dataware products. BRS/Search 7.0 will include features specifically requested by customers, as well as other enhancements. Earlier this year, Dataware acquired Sovereign Hill Software, makers of InQuery. In light of that acquisition, and Dataware's other development projects, we'll look at Dataware's plans for all products, including BRS/Search and NetAnswer." == Open Text acquisition of BRS/Search == In 2001 BRS/Search was acquired by Open Text and became LiveLink ECM Discovery Server. It is now referred to as Open Text Discovery Server. Open Text still supports both BRS/Search and NetAnswer. The core BRS/Search technology in the Open Text portfolio was augmented with other capabilities through various acquisitions. For example, Dataware's acquisition of Sovereign-Hill brought InQuery, “a probabilistic information retrieval system using an inference network”, which was developed by the University of Massachusetts Amherst Center for Intelligent Information Retrieval] out of the UMass CIIR and into the marketplace. A product re-branding table shows the range of products, their old names and their new names. InQuery is a concept search engine that uses noun phrases, parts of speech and other co-occurrence relationships in overlapping passages of text rather than single term inverted indexes of single words in documents. Open Text's portfolio has grown to include Hummingbird Content Management, and has always included BASIS. == 2003 == BRS/Search North America User's Group (BRSNAUG) website with a June 8, 2003 date listed the following features for BRS/Search. The BRSNAUG also disincorporated in 2003. Cross-references to BRS/Search on the World Wide Web point to Open Text Livelink. Engine features include: Rapid query response time. Numerical data handling and elementary statistical processing (sum, avg, min, max) Search results weighting and relevancy ranking Left- and right-truncation and expansion of search terms Superior data compression – loaded databases typically use only about 1.5 times the input stream size in disk space Large capacity databases – up to 100 million documents, each with up to 65,000 paragraphs Fine control of indexing and searching – right down to the word, sentence, and paragraph level Fine control over data security. Document access can be controlled at the database, document, and paragraph level International language support for all 7/8 bit characters sets and customizable language tables Flexible and customizable stop word lists ANSI-compatible thesauri Hypertext links within and between documents and databases (R6.x) Support for natural language parsing of queries Automatic document summarization tools Client/Server development Programming interfaces for World-Wide Web (HTTP, HTML) access to databases

Irish logarithm

The Irish logarithm was a system of number manipulation invented by Percy Ludgate for machine multiplication. The system used a combination of mechanical cams as lookup tables and mechanical addition to sum pseudo-logarithmic indices to produce partial products, which were then added to produce results. The technique is similar to Zech logarithms (also known as Jacobi logarithms), but uses a system of indices original to Ludgate. == Concept == Ludgate's algorithm compresses the multiplication of two single decimal numbers into two table lookups (to convert the digits into indices), the addition of the two indices to create a new index which is input to a second lookup table that generates the output product. Because both lookup tables are one-dimensional, and the addition of linear movements is simple to implement mechanically, this allows a less complex mechanism than would be needed to implement a two-dimensional 10×10 multiplication lookup table. Ludgate stated that he deliberately chose the values in his tables to be as small as he could make them; given this, Ludgate's tables can be simply constructed from first principles, either via pen-and-paper methods, or a systematic search using only a few tens of lines of program code. They do not correspond to either Zech logarithms, Remak indexes or Korn indexes. == Pseudocode == The following is an implementation of Ludgate's Irish logarithm algorithm in the Python programming language: Table 1 is taken from Ludgate's original paper; given the first table, the contents of Table 2 can be trivially derived from Table 1 and the definition of the algorithm. Note since that the last third of the second table is entirely zeros, this could be exploited to further simplify a mechanical implementation of the algorithm.

Skyline operator

The skyline operator is the subject of an optimization problem and computes the Pareto optimum on tuples with multiple dimensions. This operator is an extension to SQL proposed by Börzsönyi et al. to filter results from a database to keep only those objects that are not dominated by any other point on all dimensions. The name skyline comes from the view on Manhattan from the Hudson River, where those buildings can be seen that are not hidden by any other. A building is visible if it is not dominated by a building that is taller or closer to the river (two dimensions, distance to the river minimized, height maximized). Another application of the skyline operator involves selecting a hotel for a holiday. The user wants the hotel to be both cheap and close to the beach. However, hotels that are close to the beach may also be expensive. In this case, the skyline operator would only present those hotels that are not worse than any other hotel in both price and distance to the beach. == Formal specification == The skyline operator returns tuples that are not dominated by any other tuple. A tuple dominates another if it is at least as good in all dimensions and better in at least one dimension. Formally, we can think of each tuple as a vector p , q ∈ R n {\displaystyle p,q\in \mathbb {R} ^{n}} . p {\displaystyle p} dominates q {\displaystyle q} (written: p ≻ q {\displaystyle p\succ q} ) if p {\displaystyle p} is at least as good as q {\displaystyle q} in every dimension, and superior in at least one: p ≻ q ⇔ ∀ i ∈ [ n ] . p [ i ] ⪰ q [ i ] ∧ ∃ j ∈ [ n ] . p [ j ] ≻ q [ j ] . {\displaystyle p\succ q\Leftrightarrow \forall i\in [n].p[i]\succeq q[i]\wedge \exists j\in [n].p[j]\succ q[j].} Dominance ( p ≻ q {\displaystyle p\succ q} ) can be defined as any strict partial ordering, for example greater (with ≻:=> {\displaystyle \succ :=>} and ⪰:=≥ {\displaystyle \succeq :=\geq } ) or less (with ≻:=< {\displaystyle \succ :=<} and ⪰:=≤ {\displaystyle \succeq :=\leq } ). Assuming two dimensions and defining dominance in both dimensions as greater, we can compute the skyline in SQL-92 as follows: == Proposed syntax == As an extension to SQL, Börzsönyi et al. proposed the following syntax for the skyline operator: where d1, ... dm denote the dimensions of the skyline and MIN, MAX and DIFF specify whether the value in that dimension should be minimised, maximised or simply be different. Without an SQL extension, the SQL query requires an antijoin with not exists: == Implementation == The skyline operator can be implemented directly in SQL using current SQL constructs, but this has been shown to be very slow in disk-based database systems. Other algorithms have been proposed that make use of divide and conquer, indices, MapReduce and general-purpose computing on graphics cards. Skyline queries on data streams (i.e. continuous skyline queries) have been studied in the context of parallel query processing on multicores, owing to their wide diffusion in real-time decision making problems and data streaming analytics. Exasol features a native implementation.

Wumpus world

Wumpus world is a simple world use in artificial intelligence for which to represent knowledge and to reason. Wumpus world was introduced by Michael Genesereth, and is discussed in the Russell-Norvig Artificial Intelligence book Artificial Intelligence: A Modern Approach. Wumpus World is loosely inspired by the 1972 video game Hunt the Wumpus. == Problem description == In Artificial Intelligence: A Modern Approach, the wumpus world features a 4x4 grid, containing a monster called a wumpus, multiple bottomless pits and hidden gold. The agent starts at (1,1) and has to find the gold and return to the starting position. The agent loses 1 point for every move and gains 1000 points for bringing the gold to the starting position. The agent can sense pits by a breeze, stench indicates a wumpus, and sparkle indicates gold. The wumpus can be killed by an arrow but costs 10 points.

Predictor–corrector method

In numerical analysis, predictor–corrector methods belong to a class of algorithms designed to integrate ordinary differential equations – to find an unknown function that satisfies a given differential equation. All such algorithms proceed in two steps: The initial, "prediction" step, starts from a function fitted to the function-values and derivative-values at a preceding set of points to extrapolate ("anticipate") this function's value at a subsequent, new point. The next, "corrector" step refines the initial approximation by using the predicted value of the function and another method to interpolate that unknown function's value at the same subsequent point. == Predictor–corrector methods for solving ODEs == When considering the numerical solution of ordinary differential equations (ODEs), a predictor–corrector method typically uses an explicit method for the predictor step and an implicit method for the corrector step. === Example: Euler method with the trapezoidal rule === A simple predictor–corrector method (known as Heun's method) can be constructed from the Euler method (an explicit method) and the trapezoidal rule (an implicit method). Consider the differential equation y ′ = f ( t , y ) , y ( t 0 ) = y 0 , {\displaystyle y'=f(t,y),\quad y(t_{0})=y_{0},} and denote the step size by h {\displaystyle h} . First, the predictor step: starting from the current value y i {\displaystyle y_{i}} , calculate an initial guess value y ~ i + 1 {\displaystyle {\tilde {y}}_{i+1}} via the Euler method, y ~ i + 1 = y i + h f ( t i , y i ) . {\displaystyle {\tilde {y}}_{i+1}=y_{i}+hf(t_{i},y_{i}).} Next, the corrector step: improve the initial guess using trapezoidal rule, y i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ~ i + 1 ) ) . {\displaystyle y_{i+1}=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )}.} That value is used as the next step. === PEC mode and PECE mode === There are different variants of a predictor–corrector method, depending on how often the corrector method is applied. The Predict–Evaluate–Correct–Evaluate (PECE) mode refers to the variant in the above example: y ~ i + 1 = y i + h f ( t i , y i ) , y i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ~ i + 1 ) ) . {\displaystyle {\begin{aligned}{\tilde {y}}_{i+1}&=y_{i}+hf(t_{i},y_{i}),\\y_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )}.\end{aligned}}} It is also possible to evaluate the function f only once per step by using the method in Predict–Evaluate–Correct (PEC) mode: y ~ i + 1 = y i + h f ( t i , y ~ i ) , y i + 1 = y i + 1 2 h ( f ( t i , y ~ i ) + f ( t i + 1 , y ~ i + 1 ) ) . {\displaystyle {\begin{aligned}{\tilde {y}}_{i+1}&=y_{i}+hf(t_{i},{\tilde {y}}_{i}),\\y_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},{\tilde {y}}_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )}.\end{aligned}}} Additionally, the corrector step can be repeated in the hope that this achieves an even better approximation to the true solution. If the corrector method is run twice, this yields the PECECE mode: y ~ i + 1 = y i + h f ( t i , y i ) , y ^ i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ~ i + 1 ) ) , y i + 1 = y i + 1 2 h ( f ( t i , y i ) + f ( t i + 1 , y ^ i + 1 ) ) . {\displaystyle {\begin{aligned}{\tilde {y}}_{i+1}&=y_{i}+hf(t_{i},y_{i}),\\{\hat {y}}_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\tilde {y}}_{i+1}){\bigr )},\\y_{i+1}&=y_{i}+{\tfrac {1}{2}}h{\bigl (}f(t_{i},y_{i})+f(t_{i+1},{\hat {y}}_{i+1}){\bigr )}.\end{aligned}}} The PECEC mode has one fewer function evaluation than PECECE mode. More generally, if the corrector is run k times, the method is in P(EC)k or P(EC)kE mode. If the corrector method is iterated until it converges, this could be called PE(CE)∞.