Connected-component labeling
Connected-component labeling (CCL), connected-component analysis (CCA), blob extraction, region labeling, blob discovery, or region extraction is an algorithmic application of graph theory, where subsets of connected components are uniquely labeled based on a given heuristic. Connected-component labeling is not to be confused with segmentation. Connected-component labeling is used in computer vision to detect connected regions in binary digital images, although color images and data with higher dimensionality can also be processed. When integrated into an image recognition system or human-computer interaction interface, connected component labeling can operate on a variety of information. Blob extraction is generally performed on the resulting binary image from a thresholding step, but it can be applicable to gray-scale and color images as well. Blobs may be counted, filtered, and tracked. Blob extraction is related to but distinct from blob detection. == Overview == A graph, containing vertices and connecting edges, is constructed from relevant input data. The vertices contain information required by the comparison heuristic, while the edges indicate connected 'neighbors'. An algorithm traverses the graph, labeling the vertices based on the connectivity and relative values of their neighbors. Connectivity is determined by the medium; image graphs, for example, can be 4-connected neighborhood or 8-connected neighborhood. Following the labeling stage, the graph may be partitioned into subsets, after which the original information can be recovered and processed . == Definition == The usage of the term connected-component labeling (CCL) and its definition is quite consistent in the academic literature, whereas connected-component analysis (CCA) varies both in terminology and in its definition of the problem. Rosenfeld et al. define connected components labeling as the “[c]reation of a labeled image in which the positions associated with the same connected component of the binary input image have a unique label.” Shapiro et al. define CCL as an operator whose “input is a binary image and [...] output is a symbolic image in which the label assigned to each pixel is an integer uniquely identifying the connected component to which that pixel belongs.” There is no consensus on the definition of CCA in the academic literature. It is often used interchangeably with CCL. A more extensive definition is given by Shapiro et al.: “Connected component analysis consists of connected component labeling of the black pixels followed by property measurement of the component regions and decision making.” The definition for connected-component analysis presented here is more general, taking the thoughts expressed in into account. == Algorithms == The algorithms discussed can be generalised to arbitrary dimensions, albeit with increased time and space complexity. === One component at a time === This is a fast and very simple method to implement and understand. It is based on graph traversal methods in graph theory. In short, once the first pixel of a connected component is found, all the connected pixels of that connected component are labelled before going onto the next pixel in the image. This algorithm is part of Vincent and Soille's watershed segmentation algorithm, other implementations also exist. In order to do that a linked list is formed that will keep the indexes of the pixels that are connected to each other, steps (2) and (3) below. The method of defining the linked list specifies the use of a depth or a breadth first search. For this particular application, there is no difference which strategy to use. The simplest kind of a last in first out queue implemented as a singly linked list will result in a depth first search strategy. It is assumed that the input image is a binary image, with pixels being either background or foreground and that the connected components in the foreground pixels are desired. The algorithm steps can be written as: Start from the first pixel in the image. Set current label to 1. Go to (2). If this pixel is a foreground pixel and it is not already labelled, give it the current label and add it as the first element in a queue, then go to (3). If it is a background pixel or it was already labelled, then repeat (2) for the next pixel in the image. Pop out an element from the queue, and look at its neighbours (based on any type of connectivity). If a neighbour is a foreground pixel and is not already labelled, give it the current label and add it to the queue. Repeat (3) until there are no more elements in the queue. Go to (2) for the next pixel in the image and increment current label by 1. Note that the pixels are labelled before being put into the queue. The queue will only keep a pixel to check its neighbours and add them to the queue if necessary. This algorithm only needs to check the neighbours of each foreground pixel once and doesn't check the neighbours of background pixels. The pseudocode is: algorithm OneComponentAtATime(data) input : imageData[xDim][yDim] initialization : label = 0, labelArray[xDim][yDim] = 0, statusArray[xDim][yDim] = false, queue1, queue2; for i = 0 to xDim do for j = 0 to yDim do if imageData[i][j] has not been processed do if imageData[i][j] is a foreground pixel do check its four neighbors(north, south, east, west) : if neighbor is not processed do if neighbor is a foreground pixel do add it to queue1 else update its status to processed end if labelArray[i][j] = label (give label) statusArray[i][j] = true (update status) while queue1 is not empty do For each pixel in the queue do : check its four neighbors if neighbor is not processed do if neighbor is a foreground pixel do add it to queue2 else update its status to processed end if give it the current label update its status to processed remove the current element from queue1 copy queue2 into queue1 end While increase the label end if else update its status to processed end if end if end if end for end for === Two-pass === Relatively simple to implement and understand, the two-pass algorithm, (also known as the Hoshen–Kopelman algorithm) iterates through 2-dimensional binary data. The algorithm makes two passes over the image: the first pass to assign temporary labels and record equivalences, and the second pass to replace each temporary label by the smallest label of its equivalence class. The input data can be modified in situ (which carries the risk of data corruption), or labeling information can be maintained in an additional data structure. Connectivity checks are carried out by checking neighbor pixels' labels (neighbor elements whose labels are not assigned yet are ignored), or say, the north-east, the north, the north-west and the west of the current pixel (assuming 8-connectivity). 4-connectivity uses only north and west neighbors of the current pixel. The following conditions are checked to determine the value of the label to be assigned to the current pixel (4-connectivity is assumed) Conditions to check: Does the pixel to the left (west) have the same value as the current pixel? Yes – We are in the same region. Assign the same label to the current pixel No – Check next condition Do both pixels to the north and west of the current pixel have the same value as the current pixel but not the same label? Yes – We know that the north and west pixels belong to the same region and must be merged. Assign the current pixel the minimum of the north and west labels, and record their equivalence relationship No – Check next condition Does the pixel to the left (west) have a different value and the one to the north the same value as the current pixel? Yes – Assign the label of the north pixel to the current pixel No – Check next condition Do the pixel's north and west neighbors have different pixel values than current pixel? Yes – Create a new label id and assign it to the current pixel The algorithm continues this way, and creates new region labels whenever necessary. The key to a fast algorithm, however, is how this merging is done. This algorithm uses the union-find data structure which provides excellent performance for keeping track of equivalence relationships. Union-find essentially stores labels which correspond to the same blob in a disjoint-set data structure, making it easy to remember the equivalence of two labels by the use of an interface method E.g.: findSet(l). findSet(l) returns the minimum label value that is equivalent to the function argument 'l'. Once the initial labeling and equivalence recording is completed, the second pass merely replaces each pixel label with its equivalent disjoint-set representative element. A faster-scanning algorithm for connected-region extraction is presented below. On the first pass: Iterate through each element of the data by column, then by row (Raster Scanning) If the element is not the background Get the neighboring elements of the current element If there are no neighbors, uniquely
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