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  • Automated machine learning

    Automated machine learning

    Automated machine learning (AutoML) is the process of automating the tasks of applying machine learning to real-world problems. It is the combination of automation and ML. AutoML potentially includes every stage from beginning with a raw dataset to building a machine learning model ready for deployment. AutoML was proposed as an artificial intelligence-based solution to the growing challenge of applying machine learning. The high degree of automation in AutoML aims to allow non-experts to make use of machine learning models and techniques without requiring them to become experts in machine learning. Automating the process of applying machine learning end-to-end additionally offers the advantages of producing simpler solutions, faster creation of those solutions, and models that often outperform hand-designed models. Common techniques used in AutoML include hyperparameter optimization, meta-learning and neural architecture search. == Comparison to the standard approach == In a typical machine learning application, practitioners have a set of input data points to be used for training. The raw data may not be in a form that all algorithms can be applied to. To make the data amenable for machine learning, an expert may have to apply appropriate data pre-processing, feature engineering, feature extraction, and feature selection methods. After these steps, practitioners must then perform algorithm selection and hyperparameter optimization to maximize the predictive performance of their model. If deep learning is used, the architecture of the neural network must also be chosen manually by the machine learning expert. Each of these steps may be challenging, resulting in significant hurdles to using machine learning. AutoML aims to simplify these steps for non-experts, and to make it easier for them to use machine learning techniques correctly and effectively. AutoML plays an important role within the broader approach of automating data science, which also includes challenging tasks such as data engineering, data exploration and model interpretation and prediction. == Targets of automation == Automated machine learning can target various stages of the machine learning process. Steps to automate are: Data preparation and ingestion (from raw data and miscellaneous formats) Column type detection; e.g., Boolean, discrete numerical, continuous numerical, or text Column intent detection; e.g., target/label, stratification field, numerical feature, categorical text feature, or free text feature Task detection; e.g., binary classification, regression, clustering, or ranking Feature engineering Feature selection Feature extraction Meta-learning and transfer learning Detection and handling of skewed data and/or missing values Model selection - choosing which machine learning algorithm to use, often including multiple competing software implementations Ensembling - a form of consensus where using multiple models often gives better results than any single model Hyperparameter optimization of the learning algorithm and featurization Neural architecture search Pipeline selection under time, memory, and complexity constraints Selection of evaluation metrics and validation procedures Problem checking Leakage detection Misconfiguration detection Analysis of obtained results Creating user interfaces and visualizations == Challenges and Limitations == There are a number of key challenges being tackled around automated machine learning. A big issue surrounding the field is referred to as "development as a cottage industry". This phrase refers to the issue in machine learning where development relies on manual decisions and biases of experts. This is contrasted to the goal of machine learning which is to create systems that can learn and improve from their own usage and analysis of the data. Basically, it's the struggle between how much experts should get involved in the learning of the systems versus how much freedom they should be giving the machines. However, experts and developers must help create and guide these machines to prepare them for their own learning. To create this system, it requires labor intensive work with knowledge of machine learning algorithms and system design. Additionally, other challenges include meta-learning and computational resource allocation.

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  • Elastic net regularization

    Elastic net regularization

    In statistics and, in particular, in the fitting of linear or logistic regression models, the elastic net is a regularized regression method that linearly combines the L1 and L2 penalties of the lasso and ridge methods. Nevertheless, elastic net regularization is typically more accurate than both methods with regard to reconstruction. == Specification == The elastic net method overcomes the limitations of the LASSO (least absolute shrinkage and selection operator) method which uses a penalty function based on ‖ β ‖ 1 = ∑ j = 1 p | β j | . {\displaystyle \|\beta \|_{1}=\textstyle \sum _{j=1}^{p}|\beta _{j}|.} Use of this penalty function has several limitations. For example, in the "large p, small n" case (high-dimensional data with few examples), the LASSO selects at most n variables before it saturates. Also if there is a group of highly correlated variables, then the LASSO tends to select one variable from a group and ignore the others. To overcome these limitations, the elastic net adds a quadratic part ( ‖ β ‖ 2 {\displaystyle \|\beta \|^{2}} ) to the penalty, which when used alone is ridge regression (known also as Tikhonov regularization). The estimates from the elastic net method are defined by β ^ ≡ argmin β ( ‖ y − X β ‖ 2 + λ 2 ‖ β ‖ 2 + λ 1 ‖ β ‖ 1 ) . {\displaystyle {\hat {\beta }}\equiv {\underset {\beta }{\operatorname {argmin} }}(\|y-X\beta \|^{2}+\lambda _{2}\|\beta \|^{2}+\lambda _{1}\|\beta \|_{1}).} The quadratic penalty term makes the loss function strongly convex, and it therefore has a unique minimum. The elastic net method includes the LASSO and ridge regression: in other words, each of them is a special case where λ 1 = λ , λ 2 = 0 {\displaystyle \lambda _{1}=\lambda ,\lambda _{2}=0} or λ 1 = 0 , λ 2 = λ {\displaystyle \lambda _{1}=0,\lambda _{2}=\lambda } . Meanwhile, the naive version of elastic net method finds an estimator in a two-stage procedure : first for each fixed λ 2 {\displaystyle \lambda _{2}} it finds the ridge regression coefficients, and then does a LASSO type shrinkage. This kind of estimation incurs a double amount of shrinkage, which leads to increased bias and poor predictions. To improve the prediction performance, sometimes the coefficients of the naive version of elastic net is rescaled by multiplying the estimated coefficients by ( 1 + λ 2 ) {\displaystyle (1+\lambda _{2})} . Examples of where the elastic net method has been applied are: Support vector machine Metric learning Portfolio optimization Cancer prognosis == Reduction to support vector machine == It was proven in 2014 that the elastic net can be reduced to the linear support vector machine. A similar reduction was previously proven for the LASSO in 2014. The authors showed that for every instance of the elastic net, an artificial binary classification problem can be constructed such that the hyper-plane solution of a linear support vector machine (SVM) is identical to the solution β {\displaystyle \beta } (after re-scaling). The reduction immediately enables the use of highly optimized SVM solvers for elastic net problems. It also enables the use of GPU acceleration, which is often already used for large-scale SVM solvers. The reduction is a simple transformation of the original data and regularization constants X ∈ R n × p , y ∈ R n , λ 1 ≥ 0 , λ 2 ≥ 0 {\displaystyle X\in {\mathbb {R} }^{n\times p},y\in {\mathbb {R} }^{n},\lambda _{1}\geq 0,\lambda _{2}\geq 0} into new artificial data instances and a regularization constant that specify a binary classification problem and the SVM regularization constant X 2 ∈ R 2 p × n , y 2 ∈ { − 1 , 1 } 2 p , C ≥ 0. {\displaystyle X_{2}\in {\mathbb {R} }^{2p\times n},y_{2}\in \{-1,1\}^{2p},C\geq 0.} Here, y 2 {\displaystyle y_{2}} consists of binary labels − 1 , 1 {\displaystyle {-1,1}} . When 2 p > n {\displaystyle 2p>n} it is typically faster to solve the linear SVM in the primal, whereas otherwise the dual formulation is faster. Some authors have referred to the transformation as Support Vector Elastic Net (SVEN), and provided the following MATLAB pseudo-code: == Software == "Glmnet: Lasso and elastic-net regularized generalized linear models" is a software which is implemented as an R source package and as a MATLAB toolbox. This includes fast algorithms for estimation of generalized linear models with ℓ1 (the lasso), ℓ2 (ridge regression) and mixtures of the two penalties (the elastic net) using cyclical coordinate descent, computed along a regularization path. JMP Pro 11 includes elastic net regularization, using the Generalized Regression personality with Fit Model. "pensim: Simulation of high-dimensional data and parallelized repeated penalized regression" implements an alternate, parallelised "2D" tuning method of the ℓ parameters, a method claimed to result in improved prediction accuracy. scikit-learn includes linear regression and logistic regression with elastic net regularization. SVEN, a Matlab implementation of Support Vector Elastic Net. This solver reduces the Elastic Net problem to an instance of SVM binary classification and uses a Matlab SVM solver to find the solution. Because SVM is easily parallelizable, the code can be faster than Glmnet on modern hardware. SpaSM, a Matlab implementation of sparse regression, classification and principal component analysis, including elastic net regularized regression. Apache Spark provides support for Elastic Net Regression in its MLlib machine learning library. The method is available as a parameter of the more general LinearRegression class. SAS (software) The SAS procedure Glmselect and SAS Viya procedure Regselect support the use of elastic net regularization for model selection.

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  • Linear genetic programming

    Linear genetic programming

    "Linear genetic programming" is unrelated to "linear programming". Linear genetic programming (LGP) is a particular method of genetic programming wherein computer programs in a population are represented as a sequence of register-based instructions from an imperative programming language or machine language. The adjective "linear" stems from the fact that each LGP program is a sequence of instructions and the sequence of instructions is normally executed sequentially. Like in other programs, the data flow in LGP can be modeled as a graph that will visualize the potential multiple usage of register contents and the existence of structurally noneffective code (introns) which are two main differences of this genetic representation from the more common tree-based genetic programming (TGP) variant. Like other Genetic Programming methods, Linear genetic programming requires the input of data to run the program population on. Then, the output of the program (its behaviour) is judged against some target behaviour, using a fitness function. However, LGP is generally more efficient than tree genetic programming due to its two main differences mentioned above: Intermediate results (stored in registers) can be reused and a simple intron removal algorithm exists that can be executed to remove all non-effective code prior to programs being run on the intended data. These two differences often result in compact solutions and substantial computational savings compared to the highly constrained data flow in trees and the common method of executing all tree nodes in TGP. Furthermore, LGP naturally has multiple outputs by defining multiple output registers and easily cooperates with control flow operations. Linear genetic programming has been applied in many domains, including system modeling and system control with considerable success. Linear genetic programming should not be confused with linear tree programs in tree genetic programming, program composed of a variable number of unary functions and a single terminal. Note that linear tree GP differs from bit string genetic algorithms since a population may contain programs of different lengths and there may be more than two types of functions or more than two types of terminals. == Examples of LGP programs == Because LGP programs are basically represented by a linear sequence of instructions, they are simpler to read and to operate on than their tree-based counterparts. For example, a simple program written to solve a Boolean function problem with 3 inputs (in R1, R2, R3) and one output (in R0), could read like this: R1, R2, R3 have to be declared as input (read-only) registers, while R0 and R4 are declared as calculation (read-write) registers. This program is very simple, having just 5 instructions. But mutation and crossover operators could work to increase the length of the program, as well as the content of each of its instructions. Note that one instruction is non-effective or an intron (marked), since it does not impact the output register R0. Recognition of those instructions is the basis for the intron removal algorithm which is used analyze code prior to execution. Technically, this happens by copying an individual and then run the intron removal once. The copy with removed introns is then executed as many times as dictated by the number of training cases. Notably, the original individual is left intact, so as to continue participating in the evolutionary process. It is only the copy that is executed that is compressed by removing these "structural" introns. Another simple program, this one written in the LGP language Slash/A looks like a series of instructions separated by a slash: By representing such code in bytecode format, i.e. as an array of bytes each representing a different instruction, one can make mutation operations simply by changing an element of such an array.

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  • Representer theorem

    Representer theorem

    For computer science, in statistical learning theory, a representer theorem is any of several related results stating that a minimizer f ∗ {\displaystyle f^{}} of a regularized empirical risk functional defined over a reproducing kernel Hilbert space can be represented as a finite linear combination of kernel products evaluated on the input points in the training set data. == Formal statement == The following Representer Theorem and its proof are due to Schölkopf, Herbrich, and Smola: Theorem: Consider a positive-definite real-valued kernel k : X × X → R {\displaystyle k:{\mathcal {X}}\times {\mathcal {X}}\to \mathbb {R} } on a non-empty set X {\displaystyle {\mathcal {X}}} with a corresponding reproducing kernel Hilbert space H k {\displaystyle H_{k}} . Let there be given a training sample ( x 1 , y 1 ) , … , ( x n , y n ) ∈ X × R {\displaystyle (x_{1},y_{1}),\dotsc ,(x_{n},y_{n})\in {\mathcal {X}}\times \mathbb {R} } , a strictly increasing real-valued function g : [ 0 , ∞ ) → R {\displaystyle g\colon [0,\infty )\to \mathbb {R} } , and an arbitrary error function E : ( X × R 2 ) n → R ∪ { ∞ } {\displaystyle E\colon ({\mathcal {X}}\times \mathbb {R} ^{2})^{n}\to \mathbb {R} \cup \lbrace \infty \rbrace } , which together define the following regularized empirical risk functional on H k {\displaystyle H_{k}} : f ↦ E ( ( x 1 , y 1 , f ( x 1 ) ) , … , ( x n , y n , f ( x n ) ) ) + g ( ‖ f ‖ ) . {\displaystyle f\mapsto E\left((x_{1},y_{1},f(x_{1})),\ldots ,(x_{n},y_{n},f(x_{n}))\right)+g\left(\lVert f\rVert \right).} Then, any minimizer of the empirical risk f ∗ = argmin f ∈ H k { E ( ( x 1 , y 1 , f ( x 1 ) ) , … , ( x n , y n , f ( x n ) ) ) + g ( ‖ f ‖ ) } , ( ∗ ) {\displaystyle f^{}={\underset {f\in H_{k}}{\operatorname {argmin} }}\left\lbrace E\left((x_{1},y_{1},f(x_{1})),\ldots ,(x_{n},y_{n},f(x_{n}))\right)+g\left(\lVert f\rVert \right)\right\rbrace ,\quad ()} admits a representation of the form: f ∗ ( ⋅ ) = ∑ i = 1 n α i k ( ⋅ , x i ) , {\displaystyle f^{}(\cdot )=\sum _{i=1}^{n}\alpha _{i}k(\cdot ,x_{i}),} where α i ∈ R {\displaystyle \alpha _{i}\in \mathbb {R} } for all 1 ≤ i ≤ n {\displaystyle 1\leq i\leq n} . Proof: Define a mapping φ : X → H k φ ( x ) = k ( ⋅ , x ) {\displaystyle {\begin{aligned}\varphi \colon {\mathcal {X}}&\to H_{k}\\\varphi (x)&=k(\cdot ,x)\end{aligned}}} (so that φ ( x ) = k ( ⋅ , x ) {\displaystyle \varphi (x)=k(\cdot ,x)} is itself a map X → R {\displaystyle {\mathcal {X}}\to \mathbb {R} } ). Since k {\displaystyle k} is a reproducing kernel, then φ ( x ) ( x ′ ) = k ( x ′ , x ) = ⟨ φ ( x ′ ) , φ ( x ) ⟩ , {\displaystyle \varphi (x)(x')=k(x',x)=\langle \varphi (x'),\varphi (x)\rangle ,} where ⟨ ⋅ , ⋅ ⟩ {\displaystyle \langle \cdot ,\cdot \rangle } is the inner product on H k {\displaystyle H_{k}} . Given any x 1 , … , x n {\displaystyle x_{1},\ldots ,x_{n}} , one can use orthogonal projection to decompose any f ∈ H k {\displaystyle f\in H_{k}} into a sum of two functions, one lying in span ⁡ { φ ( x 1 ) , … , φ ( x n ) } {\displaystyle \operatorname {span} \left\lbrace \varphi (x_{1}),\ldots ,\varphi (x_{n})\right\rbrace } , and the other lying in the orthogonal complement: f = ∑ i = 1 n α i φ ( x i ) + v , {\displaystyle f=\sum _{i=1}^{n}\alpha _{i}\varphi (x_{i})+v,} where ⟨ v , φ ( x i ) ⟩ = 0 {\displaystyle \langle v,\varphi (x_{i})\rangle =0} for all i {\displaystyle i} . The above orthogonal decomposition and the reproducing property together show that applying f {\displaystyle f} to any training point x j {\displaystyle x_{j}} produces f ( x j ) = ⟨ ∑ i = 1 n α i φ ( x i ) + v , φ ( x j ) ⟩ = ∑ i = 1 n α i ⟨ φ ( x i ) , φ ( x j ) ⟩ , {\displaystyle f(x_{j})=\left\langle \sum _{i=1}^{n}\alpha _{i}\varphi (x_{i})+v,\varphi (x_{j})\right\rangle =\sum _{i=1}^{n}\alpha _{i}\langle \varphi (x_{i}),\varphi (x_{j})\rangle ,} which we observe is independent of v {\displaystyle v} . Consequently, the value of the error function E {\displaystyle E} in () is likewise independent of v {\displaystyle v} . For the second term (the regularization term), since v {\displaystyle v} is orthogonal to ∑ i = 1 n α i φ ( x i ) {\displaystyle \sum _{i=1}^{n}\alpha _{i}\varphi (x_{i})} and g {\displaystyle g} is strictly monotonic, we have g ( ‖ f ‖ ) = g ( ‖ ∑ i = 1 n α i φ ( x i ) + v ‖ ) = g ( ‖ ∑ i = 1 n α i φ ( x i ) ‖ 2 + ‖ v ‖ 2 ) ≥ g ( ‖ ∑ i = 1 n α i φ ( x i ) ‖ ) . {\displaystyle {\begin{aligned}g\left(\lVert f\rVert \right)&=g\left(\lVert \sum _{i=1}^{n}\alpha _{i}\varphi (x_{i})+v\rVert \right)\\&=g\left({\sqrt {\lVert \sum _{i=1}^{n}\alpha _{i}\varphi (x_{i})\rVert ^{2}+\lVert v\rVert ^{2}}}\right)\\&\geq g\left(\lVert \sum _{i=1}^{n}\alpha _{i}\varphi (x_{i})\rVert \right).\end{aligned}}} Therefore, setting v = 0 {\displaystyle v=0} does not affect the first term of (), while it strictly decreases the second term. Consequently, any minimizer f ∗ {\displaystyle f^{}} in () must have v = 0 {\displaystyle v=0} , i.e., it must be of the form f ∗ ( ⋅ ) = ∑ i = 1 n α i φ ( x i ) = ∑ i = 1 n α i k ( ⋅ , x i ) , {\displaystyle f^{}(\cdot )=\sum _{i=1}^{n}\alpha _{i}\varphi (x_{i})=\sum _{i=1}^{n}\alpha _{i}k(\cdot ,x_{i}),} which is the desired result. == Generalizations == The Theorem stated above is a particular example of a family of results that are collectively referred to as "representer theorems"; here we describe several such. The first statement of a representer theorem was due to Kimeldorf and Wahba for the special case in which E ( ( x 1 , y 1 , f ( x 1 ) ) , … , ( x n , y n , f ( x n ) ) ) = 1 n ∑ i = 1 n ( f ( x i ) − y i ) 2 , g ( ‖ f ‖ ) = λ ‖ f ‖ 2 {\displaystyle {\begin{aligned}E\left((x_{1},y_{1},f(x_{1})),\ldots ,(x_{n},y_{n},f(x_{n}))\right)&={\frac {1}{n}}\sum _{i=1}^{n}(f(x_{i})-y_{i})^{2},\\g(\lVert f\rVert )&=\lambda \lVert f\rVert ^{2}\end{aligned}}} for λ > 0 {\displaystyle \lambda >0} . Schölkopf, Herbrich, and Smola generalized this result by relaxing the assumption of the squared-loss cost and allowing the regularizer to be any strictly monotonically increasing function g ( ⋅ ) {\displaystyle g(\cdot )} of the Hilbert space norm. It is possible to generalize further by augmenting the regularized empirical risk functional through the addition of unpenalized offset terms. For example, Schölkopf, Herbrich, and Smola also consider the minimization f ~ ∗ = argmin ⁡ { E ( ( x 1 , y 1 , f ~ ( x 1 ) ) , … , ( x n , y n , f ~ ( x n ) ) ) + g ( ‖ f ‖ ) ∣ f ~ = f + h ∈ H k ⊕ span ⁡ { ψ p ∣ 1 ≤ p ≤ M } } , ( † ) {\displaystyle {\tilde {f}}^{}=\operatorname {argmin} \left\lbrace E\left((x_{1},y_{1},{\tilde {f}}(x_{1})),\ldots ,(x_{n},y_{n},{\tilde {f}}(x_{n}))\right)+g\left(\lVert f\rVert \right)\mid {\tilde {f}}=f+h\in H_{k}\oplus \operatorname {span} \lbrace \psi _{p}\mid 1\leq p\leq M\rbrace \right\rbrace ,\quad (\dagger )} i.e., we consider functions of the form f ~ = f + h {\displaystyle {\tilde {f}}=f+h} , where f ∈ H k {\displaystyle f\in H_{k}} and h {\displaystyle h} is an unpenalized function lying in the span of a finite set of real-valued functions { ψ p : X → R ∣ 1 ≤ p ≤ M } {\displaystyle \lbrace \psi _{p}\colon {\mathcal {X}}\to \mathbb {R} \mid 1\leq p\leq M\rbrace } . Under the assumption that the n × M {\displaystyle n\times M} matrix ( ψ p ( x i ) ) i p {\displaystyle \left(\psi _{p}(x_{i})\right)_{ip}} has rank M {\displaystyle M} , they show that the minimizer f ~ ∗ {\displaystyle {\tilde {f}}^{}} in ( † ) {\displaystyle (\dagger )} admits a representation of the form f ~ ∗ ( ⋅ ) = ∑ i = 1 n α i k ( ⋅ , x i ) + ∑ p = 1 M β p ψ p ( ⋅ ) {\displaystyle {\tilde {f}}^{}(\cdot )=\sum _{i=1}^{n}\alpha _{i}k(\cdot ,x_{i})+\sum _{p=1}^{M}\beta _{p}\psi _{p}(\cdot )} where α i , β p ∈ R {\displaystyle \alpha _{i},\beta _{p}\in \mathbb {R} } and the β p {\displaystyle \beta _{p}} are all uniquely determined. The conditions under which a representer theorem exists were investigated by Argyriou, Micchelli, and Pontil, who proved the following: Theorem: Let X {\displaystyle {\mathcal {X}}} be a nonempty set, k {\displaystyle k} a positive-definite real-valued kernel on X × X {\displaystyle {\mathcal {X}}\times {\mathcal {X}}} with corresponding reproducing kernel Hilbert space H k {\displaystyle H_{k}} , and let R : H k → R {\displaystyle R\colon H_{k}\to \mathbb {R} } be a differentiable regularization function. Then given a training sample ( x 1 , y 1 ) , … , ( x n , y n ) ∈ X × R {\displaystyle (x_{1},y_{1}),\ldots ,(x_{n},y_{n})\in {\mathcal {X}}\times \mathbb {R} } and an arbitrary error function E : ( X × R 2 ) m → R ∪ { ∞ } {\displaystyle E\colon ({\mathcal {X}}\times \mathbb {R} ^{2})^{m}\to \mathbb {R} \cup \lbrace \infty \rbrace } , a minimizer f ∗ = argmin f ∈ H k { E ( ( x 1 , y 1 , f ( x 1 ) ) , … , ( x n , y n , f ( x n ) ) ) + R ( f ) } ( ‡ ) {\displaystyle f^{}={\underset {f\in H_{k}}{\operatorname {argmin} }}\left\lbrace E\left((x_{1},y_{1},f(x_{1})),\ldots ,(x_{n},y_{n},f(x_{n}))\right)+R(f)\right\rbrace \quad (\ddagger )} of the regularized empirical risk admits a repr

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  • Sketch Engine

    Sketch Engine

    Sketch Engine is a corpus manager and text analysis software developed by Lexical Computing since 2003. Its purpose is to enable people studying language behaviour (lexicographers, researchers in corpus linguistics, translators or language learners) to search large text collections according to complex and linguistically motivated queries. Sketch Engine gained its name after one of the key features, word sketches: one-page, automatic, corpus-derived summaries of a word's grammatical and collocational behaviour. Currently, it supports and provides corpora in over 100 languages. == History of development == Sketch Engine is a product of Lexical Computing, a company founded in 2003 by the lexicographer and research scientist Adam Kilgarriff. He started a collaboration with Pavel Rychlý, a computer scientist working at the Natural Language Processing Centre, Masaryk University, and the developer of Manatee and Bonito (two major parts of the software suite). Kilgarriff also introduced the concept of word sketches. Since then, Sketch Engine has been commercial software, however, all the core features of Manatee and Bonito that were developed by 2003 (and extended since then) are freely available under the GPL license within the NoSketch Engine suite. == Features == A list of tools available in Sketch Engine: Word sketches – a one-page automatic derived summary of a word's grammatical and collocational behaviour Word sketch difference – compares and contrasts two words by analysing their collocations Distributional thesaurus – automated thesaurus for finding words with similar meaning or appearing in the same/similar context Concordance search – finds occurrences of a word form, lemma, phrase, tag or complex structure Collocation search – word co-occurrence analysis displaying the most frequent words (for a search word) which can be regarded as collocation candidates Word lists – generates frequency lists which can be filtered with complex criteria n-grams – generates frequency lists of multi-word expressions Terminology / Keyword extraction (both monolingual and bilingual) – automatic extraction of key words and multi-word terms from texts (based on frequency count and linguistic criteria) Diachronic analysis (Trends) – detecting words which undergo changes in the frequency of use in time (show trending words) Corpus building and management – create corpora from the Web or uploaded texts including part-of-speech tagging and lemmatization which can be used as data mining software Parallel corpus (bilingual) facilities – looking up translation examples (EUR-Lex corpus, Europarl corpus, OPUS corpus, etc.) or building a parallel corpus from own aligned texts Text type analysis – statistics of metadata in the corpus === Keywords and terminology extraction === Sketch Engine can perform automatic term extraction by identifying words typical of a particular corpus, document, or text. Single words and multi-word units can be extracted from monolingual or bilingual texts. The terminology extraction feature provides a list of relevant terms based on comparison with a large corpus of general language. This functionality is also available as a separate service called OneClick Terms with a dedicated interface. === SKELL === A free web service based on Sketch Engine and aimed at language learners and teachers is SKELL (formerly SkELL). It exploits Sketch Engine's proprietary GDEX (Good Dictionary Examples) scoring function to provide authentic example sentences for specific target words. Results are drawn from a special corpus of high-quality texts covering everyday, standard, formal, and professional language and displayed as a concordance. SKELL also includes simplified versions of Sketch Engine's word sketch and thesaurus functions. It has been suggested that SKELL can be used, for instance, to help students understand the meaning and/or usage of a word or phrase; to help teachers wanting to use example sentences in a class; to discover and explore collocates; to create gap-fill exercises; to teach various kinds of homonyms and polysemous words. SKELL was first presented in 2014, when only English was supported. Later, support was added for Russian, Czech, German, Italian and Estonian. == List of text corpora == Sketch Engine provides access to more than 800 text corpora. There are monolingual as well as multilingual corpora of different sizes (from one thousand words up to 85 billion words) and various sources (e.g. web, books, subtitles, legal documents). The list of corpora includes British National Corpus, Brown Corpus, Cambridge Academic English Corpus and Cambridge Learner Corpus, CHILDES corpora of child language, OpenSubtitles (a set of 60 parallel corpora), 24 multilingual corpora of EUR-Lex documents, the TenTen Corpus Family (multi-billion web corpora), and Trends corpora (monitor corpora with daily updates). == Architecture == Sketch Engine consists of three main components: an underlying database management system called Manatee, a web interface search front-end called Bonito, and a web interface for corpus building and management called Corpus Architect. === Manatee === Manatee is a database management system specifically devised for effective indexing of large text corpora. It is based on the idea of inverted indexing (keeping an index of all positions of a given word in the text). It has been used to index text corpora comprising tens of billions of words. Searching corpora indexed by Manatee is performed by formulating queries in the Corpus Query Language (CQL). Manatee is written in C++ and offers an API for a number of other programming languages including Python, Java, Perl and Ruby. Recently, it was rewritten into Go for faster processing of corpus queries. === Bonito === Bonito is a web interface for Manatee providing access to corpus search. In the client–server model, Manatee is the server and Bonito plays the client part. It is written in Python. === Corpus Architect === Corpus Architect is a web interface providing corpus building and management features. It is also written in Python. == Applications == Sketch Engine has been used by major British and other publishing houses for producing dictionaries such as Macmillan English Dictionary, Dictionnaires Le Robert, Oxford University Press or Shogakukan. Four of United Kingdom's five biggest dictionary publishers use Sketch Engine.

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  • Memtransistor

    Memtransistor

    The memtransistor (a blend word from Memory Transfer Resistor) is an experimental multi-terminal passive electronic component that might be used in the construction of artificial neural networks. It is a combination of the memristor and transistor technology. This technology is different from the 1T-1R approach since the devices are merged into one single entity. Multiple memristors can be embedded with a single transistor, enabling it to more accurately model a neuron with its multiple synaptic connections. A neural network produced from these would provide hardware-based artificial intelligence with a good foundation. == Applications == These types of devices would allow for a synapse model that could realise a learning rule, by which the synaptic efficacy is altered by voltages applied to the terminals of the device. An example of such a learning rule is spike-timing-dependant-plasticty by which the weight of the synapse, in this case the conductivity, could be modulated based on the timing of pre and post synaptic spikes arriving at each terminal. The advantage of this approach over two terminal memristive devices is that read and write protocols have the possibility to occur simultaneously and distinctly.

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  • Variational message passing

    Variational message passing

    Variational message passing (VMP) is an approximate inference technique for continuous- or discrete-valued Bayesian networks, with conjugate-exponential parents, developed by John Winn. VMP was developed as a means of generalizing the approximate variational methods used by such techniques as latent Dirichlet allocation, and works by updating an approximate distribution at each node through messages in the node's Markov blanket. == Likelihood lower bound == Given some set of hidden variables H {\displaystyle H} and observed variables V {\displaystyle V} , the goal of approximate inference is to maximize a lower-bound on the probability that a graphical model is in the configuration V {\displaystyle V} . Over some probability distribution Q {\displaystyle Q} (to be defined later), ln ⁡ P ( V ) = ∑ H Q ( H ) ln ⁡ P ( H , V ) P ( H | V ) = ∑ H Q ( H ) [ ln ⁡ P ( H , V ) Q ( H ) − ln ⁡ P ( H | V ) Q ( H ) ] {\displaystyle \ln P(V)=\sum _{H}Q(H)\ln {\frac {P(H,V)}{P(H|V)}}=\sum _{H}Q(H){\Bigg [}\ln {\frac {P(H,V)}{Q(H)}}-\ln {\frac {P(H|V)}{Q(H)}}{\Bigg ]}} . So, if we define our lower bound to be L ( Q ) = ∑ H Q ( H ) ln ⁡ P ( H , V ) Q ( H ) {\displaystyle L(Q)=\sum _{H}Q(H)\ln {\frac {P(H,V)}{Q(H)}}} , then the likelihood is simply this bound plus the relative entropy between P {\displaystyle P} and Q {\displaystyle Q} . Because the relative entropy is non-negative, the function L {\displaystyle L} defined above is indeed a lower bound of the log likelihood of our observation V {\displaystyle V} . The distribution Q {\displaystyle Q} will have a simpler character than that of P {\displaystyle P} because marginalizing over P {\displaystyle P} is intractable for all but the simplest of graphical models. In particular, VMP uses a factorized distribution Q ( H ) = ∏ i Q i ( H i ) , {\displaystyle Q(H)=\prod _{i}Q_{i}(H_{i}),} where H i {\displaystyle H_{i}} is a disjoint part of the graphical model. == Determining the update rule == The likelihood estimate needs to be as large as possible; because it's a lower bound, getting closer log ⁡ P {\displaystyle \log P} improves the approximation of the log likelihood. By substituting in the factorized version of Q {\displaystyle Q} , L ( Q ) {\displaystyle L(Q)} , parameterized over the hidden nodes H i {\displaystyle H_{i}} as above, is simply the negative relative entropy between Q j {\displaystyle Q_{j}} and Q j ∗ {\displaystyle Q_{j}^{}} plus other terms independent of Q j {\displaystyle Q_{j}} if Q j ∗ {\displaystyle Q_{j}^{}} is defined as Q j ∗ ( H j ) = 1 Z e E − j { ln ⁡ P ( H , V ) } {\displaystyle Q_{j}^{}(H_{j})={\frac {1}{Z}}e^{\mathbb {E} _{-j}\{\ln P(H,V)\}}} , where E − j { ln ⁡ P ( H , V ) } {\displaystyle \mathbb {E} _{-j}\{\ln P(H,V)\}} is the expectation over all distributions Q i {\displaystyle Q_{i}} except Q j {\displaystyle Q_{j}} . Thus, if we set Q j {\displaystyle Q_{j}} to be Q j ∗ {\displaystyle Q_{j}^{}} , the bound L {\displaystyle L} is maximized. == Messages in variational message passing == Parents send their children the expectation of their sufficient statistic while children send their parents their natural parameter, which also requires messages to be sent from the co-parents of the node. == Relationship to exponential families == Because all nodes in VMP come from exponential families and all parents of nodes are conjugate to their children nodes, the expectation of the sufficient statistic can be computed from the normalization factor. == VMP algorithm == The algorithm begins by computing the expected value of the sufficient statistics for that vector. Then, until the likelihood converges to a stable value (this is usually accomplished by setting a small threshold value and running the algorithm until it increases by less than that threshold value), do the following at each node: Get all messages from parents. Get all messages from children (this might require the children to get messages from the co-parents). Compute the expected value of the nodes sufficient statistics. == Constraints == Because every child must be conjugate to its parent, this has limited the types of distributions that can be used in the model. For example, the parents of a Gaussian distribution must be a Gaussian distribution (corresponding to the Mean) and a gamma distribution (corresponding to the precision, or one over σ {\displaystyle \sigma } in more common parameterizations). Discrete variables can have Dirichlet parents, and Poisson and exponential nodes must have gamma parents. More recently, VMP has been extended to handle models that violate this conditional conjugacy constraint. == Literature == John Winn; Christopher M. Bishop (2005). "Variational Message Passing" (PDF). Journal of Machine Learning Research. 6: 661–694. ISSN 1533-7928. Wikidata Q139488859. Beal, M.J. (2003). Variational Algorithms for Approximate Bayesian Inference (PDF) (PhD). Gatsby Computational Neuroscience Unit, University College London. Archived from the original (PDF) on 2005-04-28. Retrieved 2007-02-15.

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  • One-class classification

    One-class classification

    In machine learning, one-class classification (OCC), also known as unary classification or class-modelling, is an approach to the training of binary classifiers in which only examples of one of the two classes are used. Examples include the monitoring of helicopter gearboxes, motor failure prediction, or assessing the operational status of a nuclear plant as 'normal': In such scenarios, there are few, if any, examples of the catastrophic system states – rare outliers – that comprise the second class. Alternatively, the class that is being focused on may cover a small, coherent subset of the data and the training may rely on an information bottleneck approach. In practice, counter-examples from the second class may be used in later rounds of training to further refine the algorithm. == Overview == The term one-class classification (OCC) was coined by Moya & Hush (1996) and many applications can be found in scientific literature, for example outlier detection, anomaly detection, novelty detection. A feature of OCC is that it uses only sample points from the assigned class, so that a representative sampling is not strictly required for non-target classes. == Introduction == SVM based one-class classification (OCC) relies on identifying the smallest hypersphere (with radius r, and center c) consisting of all the data points. This method is called Support Vector Data Description (SVDD). Formally, the problem can be defined in the following constrained optimization form, min r , c r 2 subject to, | | Φ ( x i ) − c | | 2 ≤ r 2 ∀ i = 1 , 2 , . . . , n {\displaystyle \min _{r,c}r^{2}{\text{ subject to, }}||\Phi (x_{i})-c||^{2}\leq r^{2}\;\;\forall i=1,2,...,n} However, the above formulation is highly restrictive, and is sensitive to the presence of outliers. Therefore, a flexible formulation, that allow for the presence of outliers is formulated as shown below, min r , c , ζ r 2 + 1 ν n ∑ i = 1 n ζ i {\displaystyle \min _{r,c,\zeta }r^{2}+{\frac {1}{\nu n}}\sum _{i=1}^{n}\zeta _{i}} subject to, | | Φ ( x i ) − c | | 2 ≤ r 2 + ζ i ∀ i = 1 , 2 , . . . , n {\displaystyle {\text{subject to, }}||\Phi (x_{i})-c||^{2}\leq r^{2}+\zeta _{i}\;\;\forall i=1,2,...,n} From the Karush–Kuhn–Tucker conditions for optimality, we get c = ∑ i = 1 n α i Φ ( x i ) , {\displaystyle c=\sum _{i=1}^{n}\alpha _{i}\Phi (x_{i}),} where the α i {\displaystyle \alpha _{i}} 's are the solution to the following optimization problem: max α ∑ i = 1 n α i κ ( x i , x i ) − ∑ i , j = 1 n α i α j κ ( x i , x j ) {\displaystyle \max _{\alpha }\sum _{i=1}^{n}\alpha _{i}\kappa (x_{i},x_{i})-\sum _{i,j=1}^{n}\alpha _{i}\alpha _{j}\kappa (x_{i},x_{j})} subject to, ∑ i = 1 n α i = 1 and 0 ≤ α i ≤ 1 ν n for all i = 1 , 2 , . . . , n . {\displaystyle \sum _{i=1}^{n}\alpha _{i}=1{\text{ and }}0\leq \alpha _{i}\leq {\frac {1}{\nu n}}{\text{for all }}i=1,2,...,n.} The introduction of kernel function provide additional flexibility to the One-class SVM (OSVM) algorithm. === PU (Positive Unlabeled) learning === A similar problem is PU learning, in which a binary classifier is constructed by semi-supervised learning from only positive and unlabeled sample points. In PU learning, two sets of examples are assumed to be available for training: the positive set P {\displaystyle P} and a mixed set U {\displaystyle U} , which is assumed to contain both positive and negative samples, but without these being labeled as such. This contrasts with other forms of semisupervised learning, where it is assumed that a labeled set containing examples of both classes is available in addition to unlabeled samples. A variety of techniques exist to adapt supervised classifiers to the PU learning setting, including variants of the EM algorithm. PU learning has been successfully applied to text, time series, bioinformatics tasks, and remote sensing data. == Approaches == Several approaches have been proposed to solve one-class classification (OCC). The approaches can be distinguished into three main categories, density estimation, boundary methods, and reconstruction methods. === Density estimation methods === Density estimation methods rely on estimating the density of the data points, and set the threshold. These methods rely on assuming distributions, such as Gaussian, or a Poisson distribution. Following which discordancy tests can be used to test the new objects. These methods are robust to scale variance. Gaussian model is one of the simplest methods to create one-class classifiers. Due to Central Limit Theorem (CLT), these methods work best when large number of samples are present, and they are perturbed by small independent error values. The probability distribution for a d-dimensional object is given by: p N ( z ; μ ; Σ ) = 1 ( 2 π ) d 2 | Σ | 1 2 exp ⁡ { − 1 2 ( z − μ ) T Σ − 1 ( z − μ ) } {\displaystyle p_{\mathcal {N}}(z;\mu ;\Sigma )={\frac {1}{(2\pi )^{\frac {d}{2}}|\Sigma |^{\frac {1}{2}}}}\exp \left\{-{\frac {1}{2}}(z-\mu )^{T}\Sigma ^{-1}(z-\mu )\right\}} Where, μ {\displaystyle \mu } is the mean and Σ {\displaystyle \Sigma } is the covariance matrix. Computing the inverse of covariance matrix ( Σ − 1 {\displaystyle \Sigma ^{-1}} ) is the costliest operation, and in the cases where the data is not scaled properly, or data has singular directions pseudo-inverse Σ + {\displaystyle \Sigma ^{+}} is used to approximate the inverse, and is calculated as Σ T ( Σ Σ T ) − 1 {\displaystyle \Sigma ^{T}(\Sigma \Sigma ^{T})^{-1}} . === Boundary methods === Boundary methods focus on setting boundaries around a few set of points, called target points. These methods attempt to optimize the volume. Boundary methods rely on distances, and hence are not robust to scale variance. K-centers method, NN-d, and SVDD are some of the key examples. K-centers In K-center algorithm, k {\displaystyle k} small balls with equal radius are placed to minimize the maximum distance of all minimum distances between training objects and the centers. Formally, the following error is minimized, ε k − c e n t e r = max i ( min k | | x i − μ k | | 2 ) {\displaystyle \varepsilon _{k-center}=\max _{i}(\min _{k}||x_{i}-\mu _{k}||^{2})} The algorithm uses forward search method with random initialization, where the radius is determined by the maximum distance of the object, any given ball should capture. After the centers are determined, for any given test object z {\displaystyle z} the distance can be calculated as, d k − c e n t r ( z ) = min k | | z − μ k | | 2 {\displaystyle d_{k-centr}(z)=\min _{k}||z-\mu _{k}||^{2}} === Reconstruction methods === Reconstruction methods use prior knowledge and generating process to build a generating model that best fits the data. New objects can be described in terms of a state of the generating model. Some examples of reconstruction methods for OCC are, k-means clustering, learning vector quantization, self-organizing maps, etc. == Applications == === Document classification === The basic Support Vector Machine (SVM) paradigm is trained using both positive and negative examples, however studies have shown there are many valid reasons for using only positive examples. When the SVM algorithm is modified to only use positive examples, the process is considered one-class classification. One situation where this type of classification might prove useful to the SVM paradigm is in trying to identify a web browser's sites of interest based only off of the user's browsing history. === Biomedical studies === One-class classification can be particularly useful in biomedical studies where often data from other classes can be difficult or impossible to obtain. In studying biomedical data it can be difficult and/or expensive to obtain the set of labeled data from the second class that would be necessary to perform a two-class classification. A study from The Scientific World Journal found that the typicality approach is the most useful in analysing biomedical data because it can be applied to any type of dataset (continuous, discrete, or nominal). The typicality approach is based on the clustering of data by examining data and placing it into new or existing clusters. To apply typicality to one-class classification for biomedical studies, each new observation, y 0 {\displaystyle y_{0}} , is compared to the target class, C {\displaystyle C} , and identified as an outlier or a member of the target class. === Unsupervised Concept Drift Detection === One-class classification has similarities with unsupervised concept drift detection, where both aim to identify whether the unseen data share similar characteristics to the initial data. A concept is referred to as the fixed probability distribution which data is drawn from. In unsupervised concept drift detection, the goal is to detect if the data distribution changes without utilizing class labels. In one-class classification, the flow of data is not important. Unseen data is classified as typical or outlier depending on its characteristics, whether it is from the initi

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  • VSCO

    VSCO

    VSCO ( ), formerly known as VSCO Cam, is a photography mobile app available for iOS and Android devices. The app was created by Joel Flory and Greg Lutze. The VSCO app allows users to capture photos in the app and edit them, using preset filters and editing tools. == History == Visual Supply Company was founded by Joel Flory and Greg Lutze in California, in 2011. VSCO was launched in 2012. It raised $40 million from investors in May 2014. In 2017, VSCO launched a subscription model. As of 2018, Visual Supply Company has $90 million in funding from investors and over 2 million paying members. In 2019, VSCO acquired Rylo, a video editing startup founded by the original developer of Instagram’s Hyperlapse. Visual Supply Company has locations in Oakland, California, where it is headquartered, and Chicago, Illinois. In December 2020 VSCO acquired AI-powered video editing app Trash. In April 2018, VSCO reached over 30 million users. In September 2023, Eric Wittman was appointed as the new CEO and co-founder Joel Flory became executive chairman. == Usage == Users must register an account to use the app. Photos can be taken or imported from the camera roll, as well as short videos or animated GIFs (known in the app as DSCO; iOS only). The user can edit their photos through various preset filters, or through the "toolkit" feature which allows finer adjustments to fade, clarity, skin tone, tint, sharpness, saturation, contrast, temperature, exposure, and other properties. Users have the option of posting their photos to their profile, where they can also add captions and hashtags. Photos can also be exported back into the camera roll or shared with other social networking services. The users also have an option to edit their own videos from their camera roll with the VSCO yearly membership, but they are not able to post camera roll as VSCO Film X videos to their account on VSCO. JPEG and raw image files can be used. Research on image based social media platforms has found that engagement with posting, editing, and interacting with images can influence users' mood, self esteem, and body satisfaction. Studies also suggest that greater emotional investment in social media content is associated with increased negative psychological outcomes including stress and depressive symptoms. == In popular culture == VSCO's Oakland headquarters was a key filming location for Boots Riley's 2018 film Sorry to Bother You.

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  • Random neural network

    Random neural network

    The Random Neural Network (RNN) is a mathematical representation of an interconnected network of neurons or cells which exchange spiking signals. It was invented by Erol Gelenbe and is linked to the G-network model of queueing networks which Erol Gelenbe also invented, and with his Gene Regulatory Network models. In this model, each neuronal cell state is represented by an integer whose value rises when the cell receives an excitatory spike and drops when it receives an inhibitory spike. The spikes can originate outside the network itself, or they can come from other cells in the networks. Cells whose internal excitatory state has a positive value are allowed to send out spikes of either kind to other cells in the network according to specific cell-dependent spiking rates. The model has a mathematical solution in steady-state which provides the joint probability distribution of the network in terms of the individual probabilities that each cell is excited and able to send out spikes. Computing this solution is based on solving a set of non-linear algebraic equations whose parameters are related to the spiking rates of individual cells and their connectivity to other cells, as well as the arrival rates of spikes from outside the network. The RNN is a recurrent model, i.e. a neural network that is allowed to have complex feedback loops. A highly energy-efficient implementation of random neural networks was demonstrated by Krishna Palem et al. using the Probabilistic CMOS or PCMOS technology and was shown to be c. 226–300 times more efficient in terms of Energy-Performance-Product. RNNs are also related to artificial neural networks, which (like the random neural network) have gradient-based learning algorithms. The learning algorithm for an n-node random neural network that includes feedback loops (it is also a recurrent neural network) is of computational complexity O(n^3) (the number of computations is proportional to the cube of n, the number of neurons). The random neural network can also be used with other learning algorithms such as reinforcement learning. The RNN has been shown to be a universal approximator for bounded and continuous functions.

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  • Non-negative matrix factorization

    Non-negative matrix factorization

    Non-negative matrix factorization (NMF or NNMF), also non-negative matrix approximation is a group of algorithms in multivariate analysis and linear algebra where a matrix V is factorized into (usually) two matrices W and H, with the property that all three matrices have no negative elements. This non-negativity makes the resulting matrices easier to inspect. Also, in applications such as processing of audio spectrograms or muscular activity, non-negativity is inherent to the data being considered. Since the problem is not exactly solvable in general, it is commonly approximated numerically. NMF finds applications in such fields as astronomy, computer vision, document clustering, missing data imputation, chemometrics, audio signal processing, recommender systems, and bioinformatics. == History == In chemometrics non-negative matrix factorization has a long history under the name "self modeling curve resolution". In this framework the vectors in the right matrix are continuous curves rather than discrete vectors. Also early work on non-negative matrix factorizations was performed by a Finnish group of researchers in the 1990s under the name positive matrix factorization. It became more widely known as non-negative matrix factorization after Lee and Seung investigated the properties of the algorithm and published some simple and useful algorithms for two types of factorizations. == Background == Let matrix V be the product of the matrices W and H, V = W H . {\displaystyle \mathbf {V} =\mathbf {W} \mathbf {H} \,.} Matrix multiplication can be implemented as computing the column vectors of V as linear combinations of the column vectors in W using coefficients supplied by columns of H. That is, each column of V can be computed as follows: v i = W h i , {\displaystyle \mathbf {v} _{i}=\mathbf {W} \mathbf {h} _{i}\,,} where vi is the i-th column vector of the product matrix V and hi is the i-th column vector of the matrix H. When multiplying matrices, the dimensions of the factor matrices may be significantly lower than those of the product matrix and it is this property that forms the basis of NMF. NMF generates factors with significantly reduced dimensions compared to the original matrix. For example, if V is an m × n matrix, W is an m × p matrix, and H is a p × n matrix then p can be significantly less than both m and n. Here is an example based on a text-mining application: Let the input matrix (the matrix to be factored) be V with 10000 rows and 500 columns where words are in rows and documents are in columns. That is, we have 500 documents indexed by 10000 words. It follows that a column vector v in V represents a document. Assume we ask the algorithm to find 10 features in order to generate a features matrix W with 10000 rows and 10 columns and a coefficients matrix H with 10 rows and 500 columns. The product of W and H is a matrix with 10000 rows and 500 columns, the same shape as the input matrix V and, if the factorization worked, it is a reasonable approximation to the input matrix V. From the treatment of matrix multiplication above it follows that each column in the product matrix WH is a linear combination of the 10 column vectors in the features matrix W with coefficients supplied by the coefficients matrix H. This last point is the basis of NMF because we can consider each original document in our example as being built from a small set of hidden features. NMF generates these features. It is useful to think of each feature (column vector) in the features matrix W as a document archetype comprising a set of words where each word's cell value defines the word's rank in the feature: The higher a word's cell value the higher the word's rank in the feature. A column in the coefficients matrix H represents an original document with a cell value defining the document's rank for a feature. We can now reconstruct a document (column vector) from our input matrix by a linear combination of our features (column vectors in W) where each feature is weighted by the feature's cell value from the document's column in H. == Clustering property == NMF has an inherent clustering property, i.e., it automatically clusters the columns of input data V = ( v 1 , … , v n ) {\displaystyle \mathbf {V} =(v_{1},\dots ,v_{n})} . More specifically, the approximation of V {\displaystyle \mathbf {V} } by V ≃ W H {\displaystyle \mathbf {V} \simeq \mathbf {W} \mathbf {H} } is achieved by finding W {\displaystyle W} and H {\displaystyle H} that minimize the error function (using the Frobenius norm) ‖ V − W H ‖ F , {\displaystyle \left\|V-WH\right\|_{F},} subject to W ≥ 0 , H ≥ 0. {\displaystyle W\geq 0,H\geq 0.} , If we furthermore impose an orthogonality constraint on H {\displaystyle \mathbf {H} } , i.e. H H T = I {\displaystyle \mathbf {H} \mathbf {H} ^{T}=I} , then the above minimization is mathematically equivalent to the minimization of K-means clustering. Furthermore, the computed H {\displaystyle H} gives the cluster membership, i.e., if H k j > H i j {\displaystyle \mathbf {H} _{kj}>\mathbf {H} _{ij}} for all i ≠ k, this suggests that the input data v j {\displaystyle v_{j}} belongs to k {\displaystyle k} -th cluster. The computed W {\displaystyle W} gives the cluster centroids, i.e., the k {\displaystyle k} -th column gives the cluster centroid of k {\displaystyle k} -th cluster. This centroid's representation can be significantly enhanced by convex NMF. When the orthogonality constraint H H T = I {\displaystyle \mathbf {H} \mathbf {H} ^{T}=I} is not explicitly imposed, the orthogonality holds to a large extent, and the clustering property holds too. When the error function to be used is Kullback–Leibler divergence, NMF is identical to the probabilistic latent semantic analysis (PLSA), a popular document clustering method. == Types == === Approximate non-negative matrix factorization === Usually the number of columns of W and the number of rows of H in NMF are selected so the product WH will become an approximation to V. The full decomposition of V then amounts to the two non-negative matrices W and H as well as a residual U, such that: V = WH + U. The elements of the residual matrix can either be negative or positive. When W and H are smaller than V they become easier to store and manipulate. Another reason for factorizing V into smaller matrices W and H, is that if one's goal is to approximately represent the elements of V by significantly less data, then one has to infer some latent structure in the data. === Convex non-negative matrix factorization === In standard NMF, matrix factor W ∈ R+m × k, i.e., W can be anything in that space. Convex NMF restricts the columns of W to convex combinations of the input data vectors ( v 1 , … , v n ) {\displaystyle (v_{1},\dots ,v_{n})} . This greatly improves the quality of data representation of W. Furthermore, the resulting matrix factor H becomes more sparse and orthogonal. === Nonnegative rank factorization === In case the nonnegative rank of V is equal to its actual rank, V = WH is called a nonnegative rank factorization (NRF). The problem of finding the NRF of V, if it exists, is known to be NP-hard. === Different cost functions and regularizations === There are different types of non-negative matrix factorizations. The different types arise from using different cost functions for measuring the divergence between V and WH and possibly by regularization of the W and/or H matrices. Two simple divergence functions studied by Lee and Seung are the squared error (or Frobenius norm) and an extension of the Kullback–Leibler divergence to positive matrices (the original Kullback–Leibler divergence is defined on probability distributions). Each divergence leads to a different NMF algorithm, usually minimizing the divergence using iterative update rules. The factorization problem in the squared error version of NMF may be stated as: Given a matrix V {\displaystyle \mathbf {V} } find nonnegative matrices W and H that minimize the function F ( W , H ) = ‖ V − W H ‖ F 2 {\displaystyle F(\mathbf {W} ,\mathbf {H} )=\left\|\mathbf {V} -\mathbf {WH} \right\|_{F}^{2}} Another type of NMF for images is based on the total variation norm. When L1 regularization (akin to Lasso) is added to NMF with the mean squared error cost function, the resulting problem may be called non-negative sparse coding due to the similarity to the sparse coding problem, although it may also still be referred to as NMF. === Online NMF === Many standard NMF algorithms analyze all the data together; i.e., the whole matrix is available from the start. This may be unsatisfactory in applications where there are too many data to fit into memory or where the data are provided in streaming fashion. One such use is for collaborative filtering in recommendation systems, where there may be many users and many items to recommend, and it would be inefficient to recalculate everything when one user or one item is added to the system. The cost function for o

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  • Canonical correspondence analysis

    Canonical correspondence analysis

    In multivariate analysis, canonical correspondence analysis (CCA) is an ordination technique that determines axes from the response data as a unimodal combination of measured predictors. CCA is commonly used in ecology in order to extract gradients that drive the composition of ecological communities. CCA extends correspondence analysis (CA) with regression, in order to incorporate predictor variables. == History == CCA was developed in 1986 by Cajo ter Braak and implemented in the program CANOCO, an extension of DECORANA. To date, CCA is one of the most popular multivariate methods in ecology, despite the availability of contemporary alternatives. CCA was originally derived and implemented using an algorithm of weighted averaging, though Legendre & Legendre (1998) derived an alternative algorithm. == Assumptions == The requirements of a CCA are that the samples are random and independent. Also, the data are categorical and that the independent variables are consistent within the sample site and error-free. The original publication states the need for equal species tolerances, equal species maxima, and equispaced or uniformly distributed species optima and site scores.

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  • Labeled data

    Labeled data

    Labeled data is a group of samples that have been tagged with one or more labels. Labeling typically takes a set of unlabeled data and augments each piece of it with informative tags called judgments. For example, a data label might indicate whether a photo contains a horse or a cow, which words were uttered in an audio recording, what type of action is being performed in a video, what the topic of a news article is, what the overall sentiment of a tweet is, or whether a dot in an X-ray is a tumor. Labels can be obtained by having humans make judgments about a given piece of unlabeled data. Labeled data is significantly more expensive to obtain than the raw unlabeled data. The quality of labeled data directly influences the performance of supervised machine learning models in operation, as these models learn from the provided labels. == Crowdsourced labeled data == In 2006, Fei-Fei Li, the co-director of the Stanford Human-Centered AI Institute, initiated research to improve the artificial intelligence models and algorithms for image recognition by significantly enlarging the training data. The researchers downloaded millions of images from the World Wide Web and a team of undergraduates started to apply labels for objects to each image. In 2007, Li outsourced the data labeling work on Amazon Mechanical Turk, an online marketplace for digital piece work. The 3.2 million images that were labeled by more than 49,000 workers formed the basis for ImageNet, one of the largest hand-labeled database for outline of object recognition. == Automated data labelling == After obtaining a labeled dataset, machine learning models can be applied to the data so that new unlabeled data can be presented to the model and a likely label can be guessed or predicted for that piece of unlabeled data. == Challenges == === Data-driven bias === Algorithmic decision-making is subject to programmer-driven bias as well as data-driven bias. Training data that relies on bias labeled data will result in prejudices and omissions in a predictive model, despite the machine learning algorithm being legitimate. The labeled data used to train a specific machine learning algorithm needs to be a statistically representative sample to not bias the results. For example, in facial recognition systems underrepresented groups are subsequently often misclassified if the labeled data available to train has not been representative of the population,. In 2018, a study by Joy Buolamwini and Timnit Gebru demonstrated that two facial analysis datasets that have been used to train facial recognition algorithms, IJB-A and Adience, are composed of 79.6% and 86.2% lighter skinned humans respectively. === Human error and inconsistency === Human annotators are prone to errors and biases when labeling data. This can lead to inconsistent labels and affect the quality of the data set. The inconsistency can affect the machine learning model's ability to generalize well. === Domain expertise === Certain fields, such as legal document analysis or medical imaging, require annotators with specialized domain knowledge. Without the expertise, the annotations or labeled data may be inaccurate, negatively impacting the machine learning model's performance in a real-world scenario.

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  • Dispersive flies optimisation

    Dispersive flies optimisation

    Dispersive flies optimisation (DFO) is a bare-bones swarm intelligence algorithm which is inspired by the swarming behaviour of flies hovering over food sources. DFO is a simple optimiser which works by iteratively trying to improve a candidate solution with regard to a numerical measure that is calculated by a fitness function. Each member of the population, a fly or an agent, holds a candidate solution whose suitability can be evaluated by their fitness value. Optimisation problems are often formulated as either minimisation or maximisation problems. DFO was introduced with the intention of analysing a simplified swarm intelligence algorithm with the fewest tunable parameters and components. In the first work on DFO, this algorithm was compared against a few other existing swarm intelligence techniques using error, efficiency and diversity measures. It is shown that despite the simplicity of the algorithm, which only uses agents’ position vectors at time t to generate the position vectors for time t + 1, it exhibits a competitive performance. Since its inception, DFO has been used in a variety of applications including medical imaging and image analysis as well as data mining and machine learning. == Algorithm == DFO bears many similarities with other existing continuous, population-based optimisers (e.g. particle swarm optimization and differential evolution). In that, the swarming behaviour of the individuals consists of two tightly connected mechanisms, one is the formation of the swarm and the other is its breaking or weakening. DFO works by facilitating the information exchange between the members of the population (the swarming flies). Each fly x {\displaystyle \mathbf {x} } represents a position in a d-dimensional search space: x = ( x 1 , x 2 , … , x d ) {\displaystyle \mathbf {x} =(x_{1},x_{2},\ldots ,x_{d})} , and the fitness of each fly is calculated by the fitness function f ( x ) {\displaystyle f(\mathbf {x} )} , which takes into account the flies' d dimensions: f ( x ) = f ( x 1 , x 2 , … , x d ) {\displaystyle f(\mathbf {x} )=f(x_{1},x_{2},\ldots ,x_{d})} . The pseudocode below represents one iteration of the algorithm: for i = 1 : N flies x i . fitness = f ( x i ) {\displaystyle \mathbf {x_{i}} .{\text{fitness}}=f(\mathbf {x} _{i})} end for i x s {\displaystyle \mathbf {x} _{s}} = arg min [ f ( x i ) ] , i ∈ { 1 , … , N } {\textstyle [f(\mathbf {x} _{i})],\;i\in \{1,\ldots ,N\}} for i = 1 : N and i ≠ s {\displaystyle i\neq s} for d = 1 : D dimensions if U ( 0 , 1 ) < Δ {\displaystyle U(0,1)<\Delta } x i d t + 1 = U ( x min , d , x max , d ) {\displaystyle x_{id}^{t+1}=U(x_{\min ,d},x_{\max ,d})} else x i d t + 1 = x i n d t + U ( 0 , 1 ) ( x s d t − x i d t ) {\displaystyle x_{id}^{t+1}=x_{i_{nd}}^{t}+U(0,1)(x_{sd}^{t}-x_{id}^{t})} end if end for d end for i In the algorithm above, x i d t + 1 {\displaystyle x_{id}^{t+1}} represents fly i {\displaystyle i} at dimension d {\displaystyle d} and time t + 1 {\displaystyle t+1} ; x i n d t {\displaystyle x_{i_{nd}}^{t}} presents x i {\displaystyle x_{i}} 's best neighbouring fly in ring topology (left or right, using flies indexes), at dimension d {\displaystyle d} and time t {\displaystyle t} ; and x s d t {\displaystyle x_{sd}^{t}} is the swarm's best fly. Using this update equation, the swarm's population update depends on each fly's best neighbour (which is used as the focus μ {\displaystyle \mu } , and the difference between the current fly and the best in swarm represents the spread of movement, σ {\displaystyle \sigma } ). Other than the population size N {\displaystyle N} , the only tunable parameter is the disturbance threshold Δ {\displaystyle \Delta } , which controls the dimension-wise restart in each fly vector. This mechanism is proposed to control the diversity of the swarm. Other notable minimalist swarm algorithm is Bare bones particle swarms (BB-PSO), which is based on particle swarm optimisation, along with bare bones differential evolution (BBDE) which is a hybrid of the bare bones particle swarm optimiser and differential evolution, aiming to reduce the number of parameters. Alhakbani in her PhD thesis covers many aspects of the algorithms including several DFO applications in feature selection as well as parameter tuning. == Applications == Some of the recent applications of DFO are listed below: Optimising support vector machine kernel to classify imbalanced data Quantifying symmetrical complexity in computational aesthetics Analysing computational autopoiesis and computational creativity Identifying calcifications in medical images Building non-identical organic structures for game's space development Deep Neuroevolution: Training Deep Neural Networks for False Alarm Detection in Intensive Care Units Identification of animation key points from 2D-medialness maps

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  • Farthest-first traversal

    Farthest-first traversal

    In computational geometry, the farthest-first traversal of a compact metric space is a sequence of points in the space, where the first point is selected arbitrarily and each successive point is as far as possible from the set of previously-selected points. The same concept can also be applied to a finite set of geometric points, by restricting the selected points to belong to the set or equivalently by considering the finite metric space generated by these points. For a finite metric space or finite set of geometric points, the resulting sequence forms a permutation of the points, also known as the greedy permutation. Every prefix of a farthest-first traversal provides a set of points that is widely spaced and close to all remaining points. More precisely, no other set of equally many points can be spaced more than twice as widely, and no other set of equally many points can be less than half as far to its farthest remaining point. In part because of these properties, farthest-point traversals have many applications, including the approximation of the traveling salesman problem and the metric k-center problem. They may be constructed in polynomial time, or (for low-dimensional Euclidean spaces) approximated in near-linear time. == Definition and properties == A farthest-first traversal is a sequence of points in a compact metric space, with each point appearing at most once. If the space is finite, each point appears exactly once, and the traversal is a permutation of all of the points in the space. The first point of the sequence may be any point in the space. Each point p after the first must have the maximum possible distance to the set of points earlier than p in the sequence, where the distance from a point to a set is defined as the minimum of the pairwise distances to points in the set. A given space may have many different farthest-first traversals, depending both on the choice of the first point in the sequence (which may be any point in the space) and on ties for the maximum distance among later choices. Farthest-point traversals may be characterized by the following properties. Fix a number k, and consider the prefix formed by the first k points of the farthest-first traversal of any metric space. Let r be the distance between the final point of the prefix and the other points in the prefix. Then this subset has the following two properties: All pairs of the selected points are at distance at least r from each other, and All points of the metric space are at distance at most r from the subset. Conversely any sequence having these properties, for all choices of k, must be a farthest-first traversal. These are the two defining properties of a Delone set, so each prefix of the farthest-first traversal forms a Delone set. == Applications == Rosenkrantz, Stearns & Lewis (1977) used the farthest-first traversal to define the farthest-insertion heuristic for the travelling salesman problem. This heuristic finds approximate solutions to the travelling salesman problem by building up a tour on a subset of points, adding one point at a time to the tour in the ordering given by a farthest-first traversal. To add each point to the tour, one edge of the previous tour is broken and replaced by a pair of edges through the added point, in the cheapest possible way. Although Rosenkrantz et al. prove only a logarithmic approximation ratio for this method, they show that in practice it often works better than other insertion methods with better provable approximation ratios. Later, the same sequence of points was popularized by Gonzalez (1985), who used it as part of greedy approximation algorithms for two problems in clustering, in which the goal is to partition a set of points into k clusters. One of the two problems that Gonzalez solve in this way seeks to minimize the maximum diameter of a cluster, while the other, known as the metric k-center problem, seeks to minimize the maximum radius, the distance from a chosen central point of a cluster to the farthest point from it in the same cluster. For instance, the k-center problem can be used to model the placement of fire stations within a city, in order to ensure that every address within the city can be reached quickly by a fire truck. For both clustering problems, Gonzalez chooses a set of k cluster centers by selecting the first k points of a farthest-first traversal, and then creates clusters by assigning each input point to the nearest cluster center. If r is the distance from the set of k selected centers to the next point at position k + 1 in the traversal, then with this clustering every point is within distance r of its center and every cluster has diameter at most 2r. However, the subset of k centers together with the next point are all at distance at least r from each other, and any k-clustering would put some two of these points into a single cluster, with one of them at distance at least r/2 from its center and with diameter at least r. Thus, Gonzalez's heuristic gives an approximation ratio of 2 for both clustering problems. Gonzalez's heuristic was independently rediscovered for the metric k-center problem by Dyer & Frieze (1985), who applied it more generally to weighted k-center problems. Another paper on the k-center problem from the same time, Hochbaum & Shmoys (1985), achieves the same approximation ratio of 2, but its techniques are different. Nevertheless, Gonzalez's heuristic, and the name "farthest-first traversal", are often incorrectly attributed to Hochbaum and Shmoys. For both the min-max diameter clustering problem and the metric k-center problem, these approximations are optimal: the existence of a polynomial-time heuristic with any constant approximation ratio less than 2 would imply that P = NP. As well as for clustering, the farthest-first traversal can also be used in another type of facility location problem, the max-min facility dispersion problem, in which the goal is to choose the locations of k different facilities so that they are as far apart from each other as possible. More precisely, the goal in this problem is to choose k points from a given metric space or a given set of candidate points, in such a way as to maximize the minimum pairwise distance between the selected points. Again, this can be approximated by choosing the first k points of a farthest-first traversal. If r denotes the distance of the kth point from all previous points, then every point of the metric space or the candidate set is within distance r of the first k − 1 points. By the pigeonhole principle, some two points of the optimal solution (whatever it is) must both be within distance r of the same point among these first k − 1 chosen points, and (by the triangle inequality) within distance 2r of each other. Therefore, the heuristic solution given by the farthest-first traversal is within a factor of two of optimal. Other applications of the farthest-first traversal include color quantization (clustering the colors in an image to a smaller set of representative colors), progressive scanning of images (choosing an order to display the pixels of an image so that prefixes of the ordering produce good lower-resolution versions of the whole image rather than filling in the image from top to bottom), point selection in the probabilistic roadmap method for motion planning, simplification of point clouds, generating masks for halftone images, hierarchical clustering, finding the similarities between polygon meshes of similar surfaces, choosing diverse and high-value observation targets for underwater robot exploration, fault detection in sensor networks, modeling phylogenetic diversity, matching vehicles in a heterogenous fleet to customer delivery requests, uniform distribution of geodetic observatories on the Earth's surface or of other types of sensor network, generation of virtual point lights in the instant radiosity computer graphics rendering method, and geometric range searching data structures. == Algorithms == === Greedy exact algorithm === The farthest-first traversal of a finite point set may be computed by a greedy algorithm that maintains the distance of each point from the previously selected points, performing the following steps: Initialize the sequence of selected points to the empty sequence, and the distances of each point to the selected points to infinity. While not all points have been selected, repeat the following steps: Scan the list of not-yet-selected points to find a point p that has the maximum distance from the selected points. Remove p from the not-yet-selected points and add it to the end of the sequence of selected points. For each remaining not-yet-selected point q, replace the distance stored for q by the minimum of its old value and the distance from p to q. For a set of n points, this algorithm takes O(n2) steps and O(n2) distance computations. === Approximations === A faster approximation algorithm, given by Har-Peled & Mendel (2006), applie

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