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  • Version space learning

    Version space learning

    Version space learning is a logical approach to machine learning, specifically binary classification. Version space learning algorithms search a predefined space of hypotheses, viewed as a set of logical sentences. Formally, the hypothesis space is a disjunction H 1 ∨ H 2 ∨ . . . ∨ H n {\displaystyle H_{1}\lor H_{2}\lor ...\lor H_{n}} (i.e., one or more of hypotheses 1 through n are true). A version space learning algorithm is presented with examples, which it will use to restrict its hypothesis space; for each example x, the hypotheses that are inconsistent with x are removed from the space. This iterative refining of the hypothesis space is called the candidate elimination algorithm, the hypothesis space maintained inside the algorithm, its version space. == The version space algorithm == In settings where there is a generality-ordering on hypotheses, it is possible to represent the version space by two sets of hypotheses: (1) the most specific consistent hypotheses, and (2) the most general consistent hypotheses, where "consistent" indicates agreement with observed data. The most specific hypotheses (i.e., the specific boundary SB) cover the observed positive training examples, and as little of the remaining feature space as possible. These hypotheses, if reduced any further, exclude a positive training example, and hence become inconsistent. These minimal hypotheses essentially constitute a (pessimistic) claim that the true concept is defined just by the positive data already observed: Thus, if a novel (never-before-seen) data point is observed, it should be assumed to be negative. (I.e., if data has not previously been ruled in, then it's ruled out.) The most general hypotheses (i.e., the general boundary GB) cover the observed positive training examples, but also cover as much of the remaining feature space without including any negative training examples. These, if enlarged any further, include a negative training example, and hence become inconsistent. These maximal hypotheses essentially constitute a (optimistic) claim that the true concept is defined just by the negative data already observed: Thus, if a novel (never-before-seen) data point is observed, it should be assumed to be positive. (I.e., if data has not previously been ruled out, then it's ruled in.) Thus, during learning, the version space (which itself is a set – possibly infinite – containing all consistent hypotheses) can be represented by just its lower and upper bounds (maximally general and maximally specific hypothesis sets), and learning operations can be performed just on these representative sets. After learning, classification can be performed on unseen examples by testing the hypothesis learned by the algorithm. If the example is consistent with multiple hypotheses, a majority vote rule can be applied. == Historical background == The notion of version spaces was introduced by Mitchell in the early 1980s as a framework for understanding the basic problem of supervised learning within the context of solution search. Although the basic "candidate elimination" search method that accompanies the version space framework is not a popular learning algorithm, there are some practical implementations that have been developed (e.g., Sverdlik & Reynolds 1992, Hong & Tsang 1997, Dubois & Quafafou 2002). A major drawback of version space learning is its inability to deal with noise: any pair of inconsistent examples can cause the version space to collapse, i.e., become empty, so that classification becomes impossible. One solution of this problem is proposed by Dubois and Quafafou that proposed the Rough Version Space, where rough sets based approximations are used to learn certain and possible hypothesis in the presence of inconsistent data.

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  • Almeida–Pineda recurrent backpropagation

    Almeida–Pineda recurrent backpropagation

    Almeida–Pineda recurrent backpropagation is an extension to the backpropagation algorithm that is applicable to recurrent neural networks. It is a type of supervised learning. It was described somewhat cryptically in Richard Feynman's senior thesis, and rediscovered independently in the context of artificial neural networks by both Fernando Pineda and Luis B. Almeida. A recurrent neural network for this algorithm consists of some input units, some output units and eventually some hidden units. For a given set of (input, target) states, the network is trained to settle into a stable activation state with the output units in the target state, based on a given input state clamped on the input units.

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  • Radial basis function

    Radial basis function

    In mathematics a radial basis function (RBF) is a real-valued function φ {\textstyle \varphi } whose value depends only on the distance between the input and some fixed point, either the origin, so that φ ( x ) = φ ^ ( ‖ x ‖ ) {\textstyle \varphi (\mathbf {x} )={\hat {\varphi }}(\left\|\mathbf {x} \right\|)} , or some other fixed point c {\textstyle \mathbf {c} } , called a center, so that φ ( x ) = φ ^ ( ‖ x − c ‖ ) {\textstyle \varphi (\mathbf {x} )={\hat {\varphi }}(\left\|\mathbf {x} -\mathbf {c} \right\|)} . Any function φ {\textstyle \varphi } that satisfies the property φ ( x ) = φ ^ ( ‖ x ‖ ) {\textstyle \varphi (\mathbf {x} )={\hat {\varphi }}(\left\|\mathbf {x} \right\|)} is a radial function. The distance is usually Euclidean distance, although other metrics are sometimes used. They are often used as a collection { φ k } k {\displaystyle \{\varphi _{k}\}_{k}} which forms a basis for some function space of interest, hence the name. Sums of radial basis functions are typically used to approximate given functions. This approximation process can also be interpreted as a simple kind of neural network; this was the context in which they were originally applied to machine learning, in work by David Broomhead and David Lowe in 1988, which stemmed from Michael J. D. Powell's seminal research from 1977. RBFs are also used as a kernel in support vector classification. The technique has proven effective and flexible enough that radial basis functions are now applied in a variety of engineering applications. == Definition == A radial function is a function φ : [ 0 , ∞ ) → R {\textstyle \varphi :[0,\infty )\to \mathbb {R} } . When paired with a norm ‖ ⋅ ‖ : V → [ 0 , ∞ ) {\textstyle \|\cdot \|:V\to [0,\infty )} on a vector space, a function of the form φ c = φ ( ‖ x − c ‖ ) {\textstyle \varphi _{\mathbf {c} }=\varphi (\|\mathbf {x} -\mathbf {c} \|)} is said to be a radial kernel centered at c ∈ V {\textstyle \mathbf {c} \in V} . A radial function and the associated radial kernels are said to be radial basis functions if, for any finite set of nodes { x k } k = 1 n ⊆ V {\displaystyle \{\mathbf {x} _{k}\}_{k=1}^{n}\subseteq V} , all of the following conditions are true: === Examples === Commonly used types of radial basis functions include (writing r = ‖ x − x i ‖ {\textstyle r=\left\|\mathbf {x} -\mathbf {x} _{i}\right\|} and using ε {\textstyle \varepsilon } to indicate a shape parameter that can be used to scale the input of the radial kernel): == Approximation == Radial basis functions are typically used to build up function approximations of the form where the approximating function y ( x ) {\textstyle y(\mathbf {x} )} is represented as a sum of N {\displaystyle N} radial basis functions, each associated with a different center x i {\textstyle \mathbf {x} _{i}} , and weighted by an appropriate coefficient w i . {\textstyle w_{i}.} The weights w i {\textstyle w_{i}} can be estimated using the matrix methods of linear least squares, because the approximating function is linear in the weights w i {\textstyle w_{i}} . Approximation schemes of this kind have been particularly used in time series prediction and control of nonlinear systems exhibiting sufficiently simple chaotic behaviour and 3D reconstruction in computer graphics (for example, hierarchical RBF and Pose Space Deformation). == RBF Network == The sum can also be interpreted as a rather simple single-layer type of artificial neural network called a radial basis function network, with the radial basis functions taking on the role of the activation functions of the network. It can be shown that any continuous function on a compact interval can in principle be interpolated with arbitrary accuracy by a sum of this form, if a sufficiently large number N {\textstyle N} of radial basis functions is used. The approximant y ( x ) {\textstyle y(\mathbf {x} )} is differentiable with respect to the weights w i {\textstyle w_{i}} . The weights could thus be learned using any of the standard iterative methods for neural networks. Using radial basis functions in this manner yields a reasonable interpolation approach provided that the fitting set has been chosen such that it covers the entire range systematically (equidistant data points are ideal). However, without a polynomial term that is orthogonal to the radial basis functions, estimates outside the fitting set tend to perform poorly. == RBFs for PDEs == Radial basis functions are used to approximate functions and so can be used to discretize and numerically solve Partial Differential Equations (PDEs). This was first done in 1990 by E. J. Kansa who developed the first RBF based numerical method. It is called the Kansa method and was used to solve the elliptic Poisson equation and the linear advection-diffusion equation. The function values at points x {\displaystyle \mathbf {x} } in the domain are approximated by the linear combination of RBFs: The derivatives are approximated as such: where N {\displaystyle N} are the number of points in the discretized domain, d {\displaystyle d} the dimension of the domain and λ {\displaystyle \lambda } the scalar coefficients that are unchanged by the differential operator. Different numerical methods based on Radial Basis Functions were developed thereafter. Some methods are the RBF-FD method, the RBF-QR method and the RBF-PUM method.

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  • Markov model

    Markov model

    In probability theory, a Markov model is a stochastic model used to model pseudo-randomly changing systems. It is assumed that future states depend only on the current state, not on the events that occurred before it (that is, it assumes the Markov property). Generally, this assumption enables reasoning and computation with the model that would otherwise be intractable. For this reason, in the fields of predictive modelling and probabilistic forecasting, it is desirable for a given model to exhibit the Markov property. == Introduction == Andrey Andreyevich Markov (14 June 1856 – 20 July 1922) was a Russian mathematician best known for his work on stochastic processes. A primary subject of his research later became known as the Markov chain. There are four common Markov models used in different situations, depending on whether every sequential state is observable or not, and whether the system is to be adjusted on the basis of observations made: == Markov chain == The simplest Markov model is the Markov chain. It models the state of a system with a random variable that changes through time. In this context, the Markov property indicates that the distribution for this variable depends only on the distribution of a previous state. An example use of a Markov chain is Markov chain Monte Carlo, which uses the Markov property to prove that a particular method for performing a random walk will sample from the joint distribution. == Hidden Markov model == A hidden Markov model is a Markov chain for which the state is only partially observable or noisily observable. In other words, observations are related to the state of the system, but they are typically insufficient to precisely determine the state. Several well-known algorithms for hidden Markov models exist. For example, given a sequence of observations, the Viterbi algorithm will compute the most-likely corresponding sequence of states, the forward algorithm will compute the probability of the sequence of observations, and the Baum–Welch algorithm will estimate the starting probabilities, the transition function, and the observation function of a hidden Markov model. One common use is for speech recognition, where the observed data is the speech audio waveform and the hidden state is the spoken text. In this example, the Viterbi algorithm finds the most likely sequence of spoken words given the speech audio. == Markov decision process == A Markov decision process is a Markov chain in which state transitions depend on the current state and an action vector that is applied to the system. Typically, a Markov decision process is used to compute a policy of actions that will maximize some utility with respect to expected rewards. == Partially observable Markov decision process == A partially observable Markov decision process (POMDP) is a Markov decision process in which the state of the system is only partially observed. POMDPs are known to be NP complete, but recent approximation techniques have made them useful for a variety of applications, such as controlling simple agents or robots. == Markov random field == A Markov random field, or Markov network, may be considered to be a generalization of a Markov chain in multiple dimensions. In a Markov chain, state depends only on the previous state in time, whereas in a Markov random field, each state depends on its neighbors in any of multiple directions. A Markov random field may be visualized as a field or graph of random variables, where the distribution of each random variable depends on the neighboring variables with which it is connected. More specifically, the joint distribution for any random variable in the graph can be computed as the product of the "clique potentials" of all the cliques in the graph that contain that random variable. Modeling a problem as a Markov random field is useful because it implies that the joint distributions at each vertex in the graph may be computed in this manner. == Hierarchical Markov models == Hierarchical Markov models can be applied to categorize human behavior at various levels of abstraction. For example, a series of simple observations, such as a person's location in a room, can be interpreted to determine more complex information, such as in what task or activity the person is performing. Two kinds of Hierarchical Markov Models are the Hierarchical hidden Markov model and the Abstract Hidden Markov Model. Both have been used for behavior recognition and certain conditional independence properties between different levels of abstraction in the model allow for faster learning and inference. == Tolerant Markov model == A Tolerant Markov model (TMM) is a probabilistic-algorithmic Markov chain model. It assigns the probabilities according to a conditioning context that considers the last symbol, from the sequence to occur, as the most probable instead of the true occurring symbol. A TMM can model three different natures: substitutions, additions or deletions. Successful applications have been efficiently implemented in DNA sequences compression. == Markov-chain forecasting models == Markov-chains have been used as a forecasting methods for several topics, for example price trends, wind power and solar irradiance. The Markov-chain forecasting models utilize a variety of different settings, from discretizing the time-series to hidden Markov-models combined with wavelets and the Markov-chain mixture distribution model (MCM).

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  • Texture compression

    Texture compression

    Texture compression is a specialized form of image compression designed for storing texture maps in 3D computer graphics rendering systems. Unlike conventional image compression algorithms, texture compression algorithms are optimized for random access. Texture compression can be applied to reduce memory usage at runtime. Texture data is often the largest source of memory usage in a mobile application. == Tradeoffs == In their seminal paper on texture compression, Beers, Agrawala and Chaddha list four features that tend to differentiate texture compression from other image compression techniques. These features are: Decoding Speed It is highly desirable to be able to render directly from the compressed texture data and so, in order not to impact rendering performance, decompression must be fast. Random Access Since predicting the order that a renderer accesses texels would be difficult, any texture compression scheme must allow fast random access to decompressed texture data. This tends to rule out many better-known image compression schemes such as JPEG or run-length encoding. Compression Rate and Visual Quality In a rendering system, lossy compression can be more tolerable than for other use cases. Some texture compression libraries, such as crunch, allow the developer to flexibly trade off compression rate vs. visual quality, using methods such as rate–distortion optimization (RDO). Encoding Speed Texture compression is more tolerant of asymmetric encoding/decoding rates as the encoding process is often done only once during the application authoring process. Given the above, most texture compression algorithms involve some form of fixed-rate lossy vector quantization of small fixed-size blocks of pixels into small fixed-size blocks of coding bits, sometimes with additional extra pre-processing and post-processing steps. Block Truncation Coding is a very simple example of this family of algorithms. Because their data access patterns are well-defined, texture decompression may be executed on-the-fly during rendering as part of the overall graphics pipeline, reducing overall bandwidth and storage needs throughout the graphics system. As well as texture maps, texture compression may also be used to encode other kinds of rendering map, including bump maps and surface normal maps. Texture compression may also be used together with other forms of map processing such as mipmaps and anisotropic filtering. == Availability == Some examples of practical texture compression systems are S3 Texture Compression (S3TC), PVRTC, Ericsson Texture Compression (ETC) and Adaptive Scalable Texture Compression (ASTC); these may be supported by special function units in modern graphics processing units (GPUs). OpenGL and OpenGL ES, as implemented on many video accelerator cards and mobile GPUs, can support multiple common kinds of texture compression - generally through the use of vendor extensions. == Supercompression == A compressed-texture can be further compressed in what is called "supercompression". Fixed-rate texture compression formats are optimized for random access and are much less efficient compared to image formats such as PNG. By adding further compression, a programmer can reduce the efficiency gap. The extra layer can be decompressed by the CPU so that the GPU receives a normal compressed texture, or in newer methods, decompressed by the GPU itself. Supercompression saves the same amount of VRAM as regular texture compression, but saves more disk space and download size. == Neural Texture Compression == Random-Access Neural Compression of Material Textures (Neural Texture Compression) is a Nvidia's technology which enables two additional levels of detail (16× more texels, so four times higher resolution) while maintaining similar storage requirements as traditional texture compression methods. The key idea is compressing multiple material textures and their mipmap chains together, and using a small neural network, that is optimized for each material, to decompress them.

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  • Neural gas

    Neural gas

    Neural gas is an artificial neural network, inspired by the self-organizing map and introduced in 1991 by Thomas Martinetz and Klaus Schulten. The neural gas is a simple algorithm for finding optimal data representations based on feature vectors. The algorithm was coined "neural gas" because of the dynamics of the feature vectors during the adaptation process, which distribute themselves like a gas within the data space. It is applied where data compression or vector quantization is an issue, for example speech recognition, image processing or pattern recognition. As a robustly converging alternative to the k-means clustering it is also used for cluster analysis. == Algorithm == Suppose we want to model a probability distribution P ( x ) {\displaystyle P(x)} of data vectors x {\displaystyle x} using a finite number of feature vectors w i {\displaystyle w_{i}} , where i = 1 , ⋯ , N {\displaystyle i=1,\cdots ,N} . For each time step t {\displaystyle t} Sample data vector x {\displaystyle x} from P ( x ) {\displaystyle P(x)} Compute the distance between x {\displaystyle x} and each feature vector. Rank the distances. Let i 0 {\displaystyle i_{0}} be the index of the closest feature vector, i 1 {\displaystyle i_{1}} the index of the second closest feature vector, and so on. Update each feature vector by: w i k t + 1 = w i k t + ε ⋅ e − k / λ ⋅ ( x − w i k t ) , k = 0 , ⋯ , N − 1 {\displaystyle w_{i_{k}}^{t+1}=w_{i_{k}}^{t}+\varepsilon \cdot e^{-k/\lambda }\cdot (x-w_{i_{k}}^{t}),k=0,\cdots ,N-1} In the algorithm, ε {\displaystyle \varepsilon } can be understood as the learning rate, and λ {\displaystyle \lambda } as the neighborhood range. ε {\displaystyle \varepsilon } and λ {\displaystyle \lambda } are reduced with increasing t {\displaystyle t} so that the algorithm converges after many adaptation steps. The adaptation step of the neural gas can be interpreted as gradient descent on a cost function. By adapting not only the closest feature vector but all of them with a step size decreasing with increasing distance order, compared to (online) k-means clustering a much more robust convergence of the algorithm can be achieved. The neural gas model does not delete a node and also does not create new nodes. === Comparison with SOM === Compared to self-organized map, the neural gas model does not assume that some vectors are neighbors. If two vectors happen to be close together, they would tend to move together, and if two vectors happen to be apart, they would tend to not move together. In contrast, in an SOM, if two vectors are neighbors in the underlying graph, then they will always tend to move together, no matter whether the two vectors happen to be neighbors in the Euclidean space. The name "neural gas" is because one can imagine it to be what an SOM would be like if there is no underlying graph, and all points are free to move without the bonds that bind them together. == Variants == A number of variants of the neural gas algorithm exists in the literature so as to mitigate some of its shortcomings. More notable is perhaps Bernd Fritzke's growing neural gas, but also one should mention further elaborations such as the Growing When Required network and also the incremental growing neural gas. A performance-oriented approach that avoids the risk of overfitting is the Plastic Neural gas model. === Growing neural gas === Fritzke describes the growing neural gas (GNG) as an incremental network model that learns topological relations by using a "Hebb-like learning rule", only, unlike the neural gas, it has no parameters that change over time and it is capable of continuous learning, i.e. learning on data streams. GNG has been widely used in several domains, demonstrating its capabilities for clustering data incrementally. The GNG is initialized with two randomly positioned nodes which are initially connected with a zero age edge and whose errors are set to 0. Since in the GNG input data is presented sequentially one by one, the following steps are followed at each iteration: It is calculating the errors (distances) between the two closest nodes to the current input data. The error of the winner node (only the closest one) is respectively accumulated. The winner node and its topological neighbors (connected by an edge) are moving towards the current input by different fractions of their respective errors. The age of all edges connected to the winner node are incremented. If the winner node and the second-winner are connected by an edge, such an edge is set to 0. Else, an edge is created between them. If there are edges with an age larger than a threshold, they are removed. Nodes without connections are eliminated. If the current iteration is an integer multiple of a predefined frequency-creation threshold, a new node is inserted between the node with the largest error (among all) and its topological neighbor presenting the highest error. The link between the former and the latter nodes is eliminated (their errors are decreased by a given factor) and the new node is connected to both of them. The error of the new node is initialized as the updated error of the node which had the largest error (among all). The accumulated error of all nodes is decreased by a given factor. If the stopping criterion is not met, the algorithm takes a following input. The criterion might be a given number of epochs, i.e., a pre-set number of times where all data is presented, or the reach of a maximum number of nodes. === Incremental growing neural gas === Another neural gas variant inspired by the GNG algorithm is the incremental growing neural gas (IGNG). The authors propose the main advantage of this algorithm to be "learning new data (plasticity) without degrading the previously trained network and forgetting the old input data (stability)." === Growing when required === Having a network with a growing set of nodes, like the one implemented by the GNG algorithm was seen as a great advantage, however some limitation on the learning was seen by the introduction of the parameter λ, in which the network would only be able to grow when iterations were a multiple of this parameter. The proposal to mitigate this problem was a new algorithm, the Growing When Required network (GWR), which would have the network grow more quickly, by adding nodes as quickly as possible whenever the network identified that the existing nodes would not describe the input well enough. === Plastic neural gas === The ability to only grow a network may quickly introduce overfitting; on the other hand, removing nodes on the basis of age only, as in the GNG model, does not ensure that the removed nodes are actually useless, because removal depends on a model parameter that should be carefully tuned to the "memory length" of the stream of input data. The "Plastic Neural Gas" model solves this problem by making decisions to add or remove nodes using an unsupervised version of cross-validation, which controls an equivalent notion of "generalization ability" for the unsupervised setting. While growing-only methods only cater for the incremental learning scenario, the ability to grow and shrink is suited to the more general streaming data problem. == Implementations == To find the ranking i 0 , i 1 , … , i N − 1 {\displaystyle i_{0},i_{1},\ldots ,i_{N-1}} of the feature vectors, the neural gas algorithm involves sorting, which is a procedure that does not lend itself easily to parallelization or implementation in analog hardware. However, implementations in both parallel software and analog hardware were actually designed.

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  • FastICA

    FastICA

    FastICA is an efficient and popular algorithm for independent component analysis invented by Aapo Hyvärinen at Helsinki University of Technology. Like most ICA algorithms, FastICA seeks an orthogonal rotation of prewhitened data, through a fixed-point iteration scheme, that maximizes a measure of non-Gaussianity of the rotated components. Non-gaussianity serves as a proxy for statistical independence, which is a very strong condition and requires infinite data to verify. FastICA can also be alternatively derived as an approximative Newton iteration. == Algorithm == === Prewhitening the data === Let the X := ( x i j ) ∈ R N × M {\displaystyle \mathbf {X} :=(x_{ij})\in \mathbb {R} ^{N\times M}} denote the input data matrix, M {\displaystyle M} the number of columns corresponding with the number of samples of mixed signals and N {\displaystyle N} the number of rows corresponding with the number of independent source signals. The input data matrix X {\displaystyle \mathbf {X} } must be prewhitened, or centered and whitened, before applying the FastICA algorithm to it. Centering the data entails demeaning each component of the input data X {\displaystyle \mathbf {X} } , that is, for each i = 1 , … , N {\displaystyle i=1,\ldots ,N} and j = 1 , … , M {\displaystyle j=1,\ldots ,M} . After centering, each row of X {\displaystyle \mathbf {X} } has an expected value of 0 {\displaystyle 0} . Whitening the data requires a linear transformation L : R N × M → R N × M {\displaystyle \mathbf {L} :\mathbb {R} ^{N\times M}\to \mathbb {R} ^{N\times M}} of the centered data so that the components of L ( X ) {\displaystyle \mathbf {L} (\mathbf {X} )} are uncorrelated and have variance one. More precisely, if X {\displaystyle \mathbf {X} } is a centered data matrix, the covariance of L x := L ( X ) {\displaystyle \mathbf {L} _{\mathbf {x} }:=\mathbf {L} (\mathbf {X} )} is the ( N × N ) {\displaystyle (N\times N)} -dimensional identity matrix, that is, A common method for whitening is by performing an eigenvalue decomposition on the covariance matrix of the centered data X {\displaystyle \mathbf {X} } , E { X X T } = E D E T {\displaystyle E\left\{\mathbf {X} \mathbf {X} ^{T}\right\}=\mathbf {E} \mathbf {D} \mathbf {E} ^{T}} , where E {\displaystyle \mathbf {E} } is the matrix of eigenvectors and D {\displaystyle \mathbf {D} } is the diagonal matrix of eigenvalues. The whitened data matrix is defined thus by === Single component extraction === The iterative algorithm finds the direction for the weight vector w ∈ R N {\displaystyle \mathbf {w} \in \mathbb {R} ^{N}} that maximizes a measure of non-Gaussianity of the projection w T X {\displaystyle \mathbf {w} ^{T}\mathbf {X} } , with X ∈ R N × M {\displaystyle \mathbf {X} \in \mathbb {R} ^{N\times M}} denoting a prewhitened data matrix as described above. Note that w {\displaystyle \mathbf {w} } is a column vector. To measure non-Gaussianity, FastICA relies on a nonquadratic nonlinear function f ( u ) {\displaystyle f(u)} , its first derivative g ( u ) {\displaystyle g(u)} , and its second derivative g ′ ( u ) {\displaystyle g^{\prime }(u)} . Hyvärinen states that the functions are useful for general purposes, while may be highly robust. The steps for extracting the weight vector w {\displaystyle \mathbf {w} } for single component in FastICA are the following: Randomize the initial weight vector w {\displaystyle \mathbf {w} } Let w + ← E { X g ( w T X ) T } − E { g ′ ( w T X ) } w {\displaystyle \mathbf {w} ^{+}\leftarrow E\left\{\mathbf {X} g(\mathbf {w} ^{T}\mathbf {X} )^{T}\right\}-E\left\{g'(\mathbf {w} ^{T}\mathbf {X} )\right\}\mathbf {w} } , where E { . . . } {\displaystyle E\left\{...\right\}} means averaging over all column-vectors of matrix X {\displaystyle \mathbf {X} } Let w ← w + / ‖ w + ‖ {\displaystyle \mathbf {w} \leftarrow \mathbf {w} ^{+}/\|\mathbf {w} ^{+}\|} If not converged, go back to 2 === Multiple component extraction === The single unit iterative algorithm estimates only one weight vector which extracts a single component. Estimating additional components that are mutually "independent" requires repeating the algorithm to obtain linearly independent projection vectors - note that the notion of independence here refers to maximizing non-Gaussianity in the estimated components. Hyvärinen provides several ways of extracting multiple components with the simplest being the following. Here, 1 M {\displaystyle \mathbf {1_{M}} } is a column vector of 1's of dimension M {\displaystyle M} . Algorithm FastICA Input: C {\displaystyle C} Number of desired components Input: X ∈ R N × M {\displaystyle \mathbf {X} \in \mathbb {R} ^{N\times M}} Prewhitened matrix, where each column represents an N {\displaystyle N} -dimensional sample, where C <= N {\displaystyle C<=N} Output: W ∈ R N × C {\displaystyle \mathbf {W} \in \mathbb {R} ^{N\times C}} Un-mixing matrix where each column projects X {\displaystyle \mathbf {X} } onto independent component. Output: S ∈ R C × M {\displaystyle \mathbf {S} \in \mathbb {R} ^{C\times M}} Independent components matrix, with M {\displaystyle M} columns representing a sample with C {\displaystyle C} dimensions. for p in 1 to C: w p ← {\displaystyle \mathbf {w_{p}} \leftarrow } Random vector of length N while w p {\displaystyle \mathbf {w_{p}} } changes w p ← 1 M X g ( w p T X ) T − 1 M g ′ ( w p T X ) 1 M w p {\displaystyle \mathbf {w_{p}} \leftarrow {\frac {1}{M}}\mathbf {X} g(\mathbf {w_{p}} ^{T}\mathbf {X} )^{T}-{\frac {1}{M}}g'(\mathbf {w_{p}} ^{T}\mathbf {X} )\mathbf {1_{M}} \mathbf {w_{p}} } w p ← w p − ∑ j = 1 p − 1 ( w p T w j ) w j {\displaystyle \mathbf {w_{p}} \leftarrow \mathbf {w_{p}} -\sum _{j=1}^{p-1}(\mathbf {w_{p}} ^{T}\mathbf {w_{j}} )\mathbf {w_{j}} } w p ← w p ‖ w p ‖ {\displaystyle \mathbf {w_{p}} \leftarrow {\frac {\mathbf {w_{p}} }{\|\mathbf {w_{p}} \|}}} output W ← [ w 1 , … , w C ] {\displaystyle \mathbf {W} \leftarrow {\begin{bmatrix}\mathbf {w_{1}} ,\dots ,\mathbf {w_{C}} \end{bmatrix}}} output S ← W T X {\displaystyle \mathbf {S} \leftarrow \mathbf {W^{T}} \mathbf {X} }

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  • Multidimensional scaling

    Multidimensional scaling

    Multidimensional scaling (MDS) is a means of visualizing the level of similarity of individual cases of a data set. MDS is used to translate distances between each pair of n {\textstyle n} objects in a set into a configuration of n {\textstyle n} points mapped into an abstract Cartesian space. More technically, MDS refers to a set of related ordination techniques used in information visualization, in particular to display the information contained in a distance matrix. It is a form of non-linear dimensionality reduction. Given a distance matrix with the distances between each pair of objects in a set, and a chosen number of dimensions, N, an MDS algorithm places each object into N-dimensional space (a lower-dimensional representation) such that the between-object distances are preserved as well as possible. For N = 1, 2, and 3, the resulting points can be visualized on a scatter plot. Core theoretical contributions to MDS were made by James O. Ramsay of McGill University, who is also regarded as the founder of functional data analysis. == Types == MDS algorithms fall into a taxonomy, depending on the meaning of the input matrix: === Classical multidimensional scaling === It is also known as Principal Coordinates Analysis (PCoA), Torgerson Scaling or Torgerson–Gower scaling. It takes an input matrix giving dissimilarities between pairs of items and outputs a coordinate matrix whose configuration minimizes a loss function called strain, which is given by Strain D ( x 1 , x 2 , . . . , x n ) = ( ∑ i , j ( b i j − x i T x j ) 2 ∑ i , j b i j 2 ) 1 / 2 , {\displaystyle {\text{Strain}}_{D}(x_{1},x_{2},...,x_{n})={\Biggl (}{\frac {\sum _{i,j}{\bigl (}b_{ij}-x_{i}^{T}x_{j}{\bigr )}^{2}}{\sum _{i,j}b_{ij}^{2}}}{\Biggr )}^{1/2},} where x i {\displaystyle x_{i}} denote vectors in N-dimensional space, x i T x j {\displaystyle x_{i}^{T}x_{j}} denotes the scalar product between x i {\displaystyle x_{i}} and x j {\displaystyle x_{j}} , and b i j {\displaystyle b_{ij}} are the elements of the matrix B {\displaystyle B} defined on step 2 of the following algorithm, which are computed from the distances. Steps of a Classical MDS algorithm: Classical MDS uses the fact that the coordinate matrix X {\displaystyle X} can be derived by eigenvalue decomposition from B = X X ′ {\textstyle B=XX'} . And the matrix B {\textstyle B} can be computed from proximity matrix D {\textstyle D} by using double centering. Set up the squared proximity matrix D ( 2 ) = [ d i j 2 ] {\textstyle D^{(2)}=[d_{ij}^{2}]} Apply double centering: B = − 1 2 C D ( 2 ) C {\textstyle B=-{\frac {1}{2}}CD^{(2)}C} using the centering matrix C = I − 1 n J n {\textstyle C=I-{\frac {1}{n}}J_{n}} , where n {\textstyle n} is the number of objects, I {\textstyle I} is the n × n {\textstyle n\times n} identity matrix, and J n {\textstyle J_{n}} is an n × n {\textstyle n\times n} matrix of all ones. Determine the m {\textstyle m} largest eigenvalues λ 1 , λ 2 , . . . , λ m {\textstyle \lambda _{1},\lambda _{2},...,\lambda _{m}} and corresponding eigenvectors e 1 , e 2 , . . . , e m {\textstyle e_{1},e_{2},...,e_{m}} of B {\textstyle B} (where m {\textstyle m} is the number of dimensions desired for the output). Now, X = E m Λ m 1 / 2 {\textstyle X=E_{m}\Lambda _{m}^{1/2}} , where E m {\textstyle E_{m}} is the matrix of m {\textstyle m} eigenvectors and Λ m {\textstyle \Lambda _{m}} is the diagonal matrix of m {\textstyle m} eigenvalues of B {\textstyle B} . Classical MDS assumes metric distances. So this is not applicable for direct dissimilarity ratings. === Metric multidimensional scaling (mMDS) === It is a superset of classical MDS that generalizes the optimization procedure to a variety of loss functions and input matrices of known distances with weights and so on. A useful loss function in this context is called stress, which is often minimized using a procedure called stress majorization. Metric MDS minimizes the cost function called “stress” which is a residual sum of squares: Stress D ( x 1 , x 2 , . . . , x n ) = ∑ i ≠ j = 1 , . . . , n ( d i j − ‖ x i − x j ‖ ) 2 . {\displaystyle {\text{Stress}}_{D}(x_{1},x_{2},...,x_{n})={\sqrt {\sum _{i\neq j=1,...,n}{\bigl (}d_{ij}-\|x_{i}-x_{j}\|{\bigr )}^{2}}}.} Metric scaling uses a power transformation with a user-controlled exponent p {\textstyle p} : d i j p {\textstyle d_{ij}^{p}} and − d i j 2 p {\textstyle -d_{ij}^{2p}} for distance. In classical scaling p = 1. {\textstyle p=1.} Non-metric scaling is defined by the use of isotonic regression to nonparametrically estimate a transformation of the dissimilarities. === Non-metric multidimensional scaling (NMDS) === In contrast to metric MDS, non-metric MDS finds both a non-parametric monotonic relationship between the dissimilarities in the item-item matrix and the Euclidean distances between items, and the location of each item in the low-dimensional space. Let d i j {\displaystyle d_{ij}} be the dissimilarity between points i , j {\displaystyle i,j} . Let d ^ i j = ‖ x i − x j ‖ {\displaystyle {\hat {d}}_{ij}=\|x_{i}-x_{j}\|} be the Euclidean distance between embedded points x i , x j {\displaystyle x_{i},x_{j}} . Now, for each choice of the embedded points x i {\displaystyle x_{i}} and is a monotonically increasing function f {\displaystyle f} , define the "stress" function: S ( x 1 , . . . , x n ; f ) = ∑ i < j ( f ( d i j ) − d ^ i j ) 2 ∑ i < j d ^ i j 2 . {\displaystyle S(x_{1},...,x_{n};f)={\sqrt {\frac {\sum _{i Read more →

  • Web development

    Web development

    Web development is the process of designing, developing and maintaining websites and web apps. Web development encompasses several different fields, most commonly referring to the programming of websites. Front-end development is the act of developing the user interface and client-side code, while back-end development focuses on the infrastructure behind a website, mainly server-side code. Since the World Wide Web was released publicly in 1993, web development has evolved greatly, with websites changing from a collection of static HTML pages to complex projects using frameworks, servers, and databases. == Overview == Web development includes many individual tasks, including web design, web content development, networking, and coding. Among web professionals, "web development" usually refers to the main non-design aspects of building websites: writing markup and coding. Web development is generally split into two fields: front-end development and back-end development. Front-end developers create the user interface of websites, turning web designs into HTML, CSS, and JavaScript code. Front-end developers must also make sure that websites work consistently across different browsers and devices. Back-end development, also known as server-side development, focuses on the infrastructure behind a website, including APIs, database management, and security. Some choose to be full-stack developers, meaning they work on both the front-end and back-end. == History == The World Wide Web is often categorised into three generations: Web 1.0, Web 2.0, and Web 3.0 (or Web3). It was invented in 1989, and released to the public in 1993. In the early years of the web, restrospecitvely referred to as Web 1.0, websites were simply a collection of static HTML files, and had limited interactivity. After the introduction of JavaScript in 1995, websites could contain logic, allowing for interactivity. The following year CSS was released, allowing greater control over the styling of web pages. In 1999, the term Web 2.0 was coined by Darcy DiNucci. The term later resurfaced in the early 2000s, as websites started to increase in complexity, requiring server-side services in addition to JavaScript. This led to the emergence of various new programming languages and frameworks designed for backend services, such as PHP, Active Server Pages, and Jakarta Server Pages. This enabled websites to do additional server-side processing, such as accessing databases. Another shift in web development was the release of the iPhone in 2007. This created a new medium for accessing the web, requiring a new approach to web development, and resulting in responsive web design, which allows a single website to appear different depending on the device running it. Later, progressive web apps were introduced, allowing websites to be installed on a device as an independent application. In the 2010s, JavaScript frameworks began to emerge, creating new ways to manipulate web pages, and increasing compatibility between web browsers. JQuery was popular in the early 2010s, but was later surpassed by other frameworks such as React and Vue.js. In the mid 2020s, use of AI became prevalent among web developers, with the 2025 Stack Overflow survey showing over 80% of developers saying the use AI at least monthly in their development process.

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  • GeWorkbench

    GeWorkbench

    geWorkbench (genomics Workbench) is an open-source software platform for integrated genomic data analysis. It is a desktop application written in the programming language Java. geWorkbench uses a component architecture. As of 2016, there are more than 70 plug-ins available, providing for the visualization and analysis of gene expression, sequence, and structure data. geWorkbench is the Bioinformatics platform of MAGNet, the National Center for the Multi-scale Analysis of Genomic and Cellular Networks, one of the 8 National Centers for Biomedical Computing funded through the NIH Roadmap (NIH Common Fund). Many systems and structure biology tools developed by MAGNet investigators are available as geWorkbench plugins. == Features == Computational analysis tools such as t-test, hierarchical clustering, self-organizing maps, regulatory network reconstruction, BLAST searches, pattern-motif discovery, protein structure prediction, structure-based protein annotation, etc. Visualization of gene expression (heatmaps, volcano plot), molecular interaction networks (through Cytoscape), protein sequence and protein structure data (e.g., MarkUs). Integration of gene and pathway annotation information from curated sources as well as through Gene Ontology enrichment analysis. Component integration through platform management of inputs and outputs. Among data that can be shared between components are expression datasets, interaction networks, sample and marker (gene) sets and sequences. Dataset history tracking - complete record of data sets used and input settings. Integration with 3rd party tools such as GenePattern, Cytoscape, and Genomespace. Demonstrations of each feature described can be found at GeWorkbench-web Tutorials. == Versions == geWorkbench is open-source software that can be downloaded and installed locally. A zip file of the released version Java source is also available. Prepackaged installer versions also exist for Windows, Macintosh, and Linux.

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  • Multidimensional scaling

    Multidimensional scaling

    Multidimensional scaling (MDS) is a means of visualizing the level of similarity of individual cases of a data set. MDS is used to translate distances between each pair of n {\textstyle n} objects in a set into a configuration of n {\textstyle n} points mapped into an abstract Cartesian space. More technically, MDS refers to a set of related ordination techniques used in information visualization, in particular to display the information contained in a distance matrix. It is a form of non-linear dimensionality reduction. Given a distance matrix with the distances between each pair of objects in a set, and a chosen number of dimensions, N, an MDS algorithm places each object into N-dimensional space (a lower-dimensional representation) such that the between-object distances are preserved as well as possible. For N = 1, 2, and 3, the resulting points can be visualized on a scatter plot. Core theoretical contributions to MDS were made by James O. Ramsay of McGill University, who is also regarded as the founder of functional data analysis. == Types == MDS algorithms fall into a taxonomy, depending on the meaning of the input matrix: === Classical multidimensional scaling === It is also known as Principal Coordinates Analysis (PCoA), Torgerson Scaling or Torgerson–Gower scaling. It takes an input matrix giving dissimilarities between pairs of items and outputs a coordinate matrix whose configuration minimizes a loss function called strain, which is given by Strain D ( x 1 , x 2 , . . . , x n ) = ( ∑ i , j ( b i j − x i T x j ) 2 ∑ i , j b i j 2 ) 1 / 2 , {\displaystyle {\text{Strain}}_{D}(x_{1},x_{2},...,x_{n})={\Biggl (}{\frac {\sum _{i,j}{\bigl (}b_{ij}-x_{i}^{T}x_{j}{\bigr )}^{2}}{\sum _{i,j}b_{ij}^{2}}}{\Biggr )}^{1/2},} where x i {\displaystyle x_{i}} denote vectors in N-dimensional space, x i T x j {\displaystyle x_{i}^{T}x_{j}} denotes the scalar product between x i {\displaystyle x_{i}} and x j {\displaystyle x_{j}} , and b i j {\displaystyle b_{ij}} are the elements of the matrix B {\displaystyle B} defined on step 2 of the following algorithm, which are computed from the distances. Steps of a Classical MDS algorithm: Classical MDS uses the fact that the coordinate matrix X {\displaystyle X} can be derived by eigenvalue decomposition from B = X X ′ {\textstyle B=XX'} . And the matrix B {\textstyle B} can be computed from proximity matrix D {\textstyle D} by using double centering. Set up the squared proximity matrix D ( 2 ) = [ d i j 2 ] {\textstyle D^{(2)}=[d_{ij}^{2}]} Apply double centering: B = − 1 2 C D ( 2 ) C {\textstyle B=-{\frac {1}{2}}CD^{(2)}C} using the centering matrix C = I − 1 n J n {\textstyle C=I-{\frac {1}{n}}J_{n}} , where n {\textstyle n} is the number of objects, I {\textstyle I} is the n × n {\textstyle n\times n} identity matrix, and J n {\textstyle J_{n}} is an n × n {\textstyle n\times n} matrix of all ones. Determine the m {\textstyle m} largest eigenvalues λ 1 , λ 2 , . . . , λ m {\textstyle \lambda _{1},\lambda _{2},...,\lambda _{m}} and corresponding eigenvectors e 1 , e 2 , . . . , e m {\textstyle e_{1},e_{2},...,e_{m}} of B {\textstyle B} (where m {\textstyle m} is the number of dimensions desired for the output). Now, X = E m Λ m 1 / 2 {\textstyle X=E_{m}\Lambda _{m}^{1/2}} , where E m {\textstyle E_{m}} is the matrix of m {\textstyle m} eigenvectors and Λ m {\textstyle \Lambda _{m}} is the diagonal matrix of m {\textstyle m} eigenvalues of B {\textstyle B} . Classical MDS assumes metric distances. So this is not applicable for direct dissimilarity ratings. === Metric multidimensional scaling (mMDS) === It is a superset of classical MDS that generalizes the optimization procedure to a variety of loss functions and input matrices of known distances with weights and so on. A useful loss function in this context is called stress, which is often minimized using a procedure called stress majorization. Metric MDS minimizes the cost function called “stress” which is a residual sum of squares: Stress D ( x 1 , x 2 , . . . , x n ) = ∑ i ≠ j = 1 , . . . , n ( d i j − ‖ x i − x j ‖ ) 2 . {\displaystyle {\text{Stress}}_{D}(x_{1},x_{2},...,x_{n})={\sqrt {\sum _{i\neq j=1,...,n}{\bigl (}d_{ij}-\|x_{i}-x_{j}\|{\bigr )}^{2}}}.} Metric scaling uses a power transformation with a user-controlled exponent p {\textstyle p} : d i j p {\textstyle d_{ij}^{p}} and − d i j 2 p {\textstyle -d_{ij}^{2p}} for distance. In classical scaling p = 1. {\textstyle p=1.} Non-metric scaling is defined by the use of isotonic regression to nonparametrically estimate a transformation of the dissimilarities. === Non-metric multidimensional scaling (NMDS) === In contrast to metric MDS, non-metric MDS finds both a non-parametric monotonic relationship between the dissimilarities in the item-item matrix and the Euclidean distances between items, and the location of each item in the low-dimensional space. Let d i j {\displaystyle d_{ij}} be the dissimilarity between points i , j {\displaystyle i,j} . Let d ^ i j = ‖ x i − x j ‖ {\displaystyle {\hat {d}}_{ij}=\|x_{i}-x_{j}\|} be the Euclidean distance between embedded points x i , x j {\displaystyle x_{i},x_{j}} . Now, for each choice of the embedded points x i {\displaystyle x_{i}} and is a monotonically increasing function f {\displaystyle f} , define the "stress" function: S ( x 1 , . . . , x n ; f ) = ∑ i < j ( f ( d i j ) − d ^ i j ) 2 ∑ i < j d ^ i j 2 . {\displaystyle S(x_{1},...,x_{n};f)={\sqrt {\frac {\sum _{i Read more →

  • Generalized blockmodeling

    Generalized blockmodeling

    In generalized blockmodeling, the blockmodeling is done by "the translation of an equivalence type into a set of permitted block types", which differs from the conventional blockmodeling, which is using the indirect approach. It's a special instance of the direct blockmodeling approach. Generalized blockmodeling was introduced in 1994 by Patrick Doreian, Vladimir Batagelj and Anuška Ferligoj. == Definition == Generalized blockmodeling approach is a direct one, "where the optimal partition(s) is (are) identified based on minimal values of a compatible criterion function defined by the difference between empirical blocks and corresponding ideal blocks". At the same time, the much broader set of block types is introduced (while in conventional blockmodeling only certain types are used). The conventional blockmodeling is inductive due to nonspecification of neither the clusters or the location of block types, while in generalized blockmodeling the blockmodel is specified with more detail than just the permition of certain block types (e.g., prespecification). Further, it's possible to define departures from the permitted (ideal) blocktype, using criterion function. Using local optimization procedure, firstly the initial clustering (with specified number of clusters is done, based on random creation. How the clusters are neighboring to each other, is based on two transformations: 1) a vertex is moved from one to another cluster or 2) a pair of vertices is interchanged between two different clusters. This process of transformation steps is repeated many times, until only the best fitting partitions (with the minimized value of the criterion function) are kept as blockmodels for the future exploration of the network. Different types of generalized blockmodeling are: generalized binary blockmodeling, generalized valued blockmodeling and generalized homogeneity blockmodeling. == Benefits == According to Patrick Doreian, the benefits of generalized blockmodeling, are as follows: usage of explicit criterion function, compatible with a given type of equivalence, results to in-built measure of fit, which is integral to the establishment of the blockmodels (in conventional blockmodeling, there is no compelling and coherent measures of fit); partitions, based on generalized blockmodeling, regularly outperform and never perform less well than the partitions, based on conventional approach; with generalized blockmodeling it's possible to specify new types of blockmodels; this potentially unlimited set of new block types also results in permittion of inclusion of substantively driven blockmodels; in generalized blockmodeling, the specification of the block types and the location of some of them in the blockmodel is possible; researcher can speficy which (pair of) vertices must be (not) clustered together; this approach also allows the imposition of penalties, resulting into identification of empirical null blocks without inconsistencies with a corresponding ideal null block. == Problems == According to Doreian, the problems of generalized blockmodeling, are as follows: unknown sensitivity to particular data features, examination of boundary problems, computationally burdensome, which results in a constraint regarding practical network size (generalized blockmodeling is thus primarily used to analyse smaller networks (below 100 units)), identifying structure from incomplete network information, most of generalized blockmodeling is based on binary networks, but there is also development in the field of valued networks, criterion function is minimized for a specified blockmodel, with results in issues of evaluating statistically, based on the structural data alone, problems regarding three dimensional network data, problems regarding the evolution of fundamental network structure. == Book == The book with the same title, Generalized blockmodeling, written by Patrick Doreian, Vladimir Batagelj and Anuška Ferligoj, was in 2007 awarded the Harrison White Outstanding Book Award by the Mathematical Sociology Section of American Sociological Association.

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  • Headway (app)

    Headway (app)

    Headway, also known as the Headway App, is an educational technology (EdTech) product that provides short text and audio summaries of nonfiction books. The product was launched in 2019 by Anton Pavlovsky and is developed by Headway Inc, a global consumer tech company that operates in the lifelong learning space. == History == The Headway app was launched in January 2019, with the first version of the application released the same year. In 2021, Headway ranked first globally in downloads within the book summary application niche. In 2022, the application received the Golden Novum Design Award for product design. In 2023 and 2024, Headway appeared in several App Store editorial selections, including App of the Day in multiple countries, and received an Editors’ Choice label in the United States. In April 2025, the application was listed as a Webby Honoree in the Learning & Education category. The company has also launched the Headway Scholarship for Book Lovers. As of 2025, publicly available reporting notes that the Headway app has surpassed 50 million downloads and is among the Top 10 iOS applications by revenue in the Education category worldwide. == Products and features == The Headway app provides short-form summaries of nonfiction books in both text and audio formats. Content is produced by an in-house team of writers, editors, and voice actors. Features include highlighting and saving key insights, spaced repetition for knowledge retention, and offline access to downloaded summaries. The app is available on iOS, iPadOS, watchOS, Android, CarPlay, and Android Auto, and supports multiple languages. == Pricing == Headway operates on a subscription business model, with optional paid plans alongside free access. The company publicly provides its terms of use, privacy policy, subscription details, and AI usage policy on its official website. == Technology and integrations == Headway reports that its book summaries are written and edited manually, while artificial intelligence tools are used in limited supporting functions, such as experimental conversational features and selected marketing processes. == Adoption == According to figures released by the company, the app has exceeded 50 million downloads worldwide. Sensor Tower data indicates that Headway has been the most downloaded application in its niche since October 2020. In January 2025, the app claimed the #1 position in the Education category in both the United States and United Kingdom App Stores and remained among the Top 10 iOS applications globally by revenue within the Education category. == Awards == The Headway app has received several product-level distinctions. In 2023 and 2024, it appeared in multiple App Store editorial selections, including App of the Day features and an Editors’ Choice label in the United States. In 2025, the app was recognized as a Webby Honoree in the Learning & Education category. The product has also been featured in independent media roundups of notable educational applications.

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  • LamaH

    LamaH

    LamaH (Large-Sample Data for Hydrology and Environmental Sciences) is a cross-state initiative for unified data preparation and collection in the field of catchment hydrology. Hydrological datasets, for example, are an integral component for creating flood forecasting models. == Features == LamaH datasets always consist of a combination of meteorological time series (e.g., precipitation, temperature) and hydrologically relevant catchment attributes (e.g., elevation, slope, forest area, soil, bedrock) aggregated over the respective catchment as well as associated hydrological time series at the catchment outlet (discharge). By evaluating the large and heterogeneous sample (large-sample) of catchments, it is possible to gain insights into the hydrological cycle that would probably not be achievable with local and small-scale studies. The structure of the dataset allows an evaluation based on machine learning methods (deep learning). The accompanying paper explains not only the data preparation but also any limitations, uncertainties and possible applications. == Difference to CAMELS == The LamaH datasets are quite similar to the CAMELS datasets, but additionally feature: Further basin delineations (based on intermediate catchments) and attributes (e.g. flow distance and altitude difference between two topologically adjacent discharge gauges), enabling the setup of an interconnected hydrological network Attributes for classifying catchments and runoff gauges according to the degree and type of (anthropogenic) influence == Availability == LamaH datasets are available for the following regions: Central Europe (Austria and its hydrological upstream areas in Germany, Czech Republic, Switzerland, Slovakia, Italy, Liechtenstein, Slovenia and Hungary) / 859 catchments CAMELS datasets are available for (ranked by publication date): Contiguous USA (exclusive Alaska and Hawaii) / 671 catchments Chile / 516 catchments Brazil / 897 catchments Great Britain / 671 catchments Australia / 222 catchments Both the CAMELS and LamaH datasets are licensed with Creative Commons and are therefore available barrier-free for the public.

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  • Analogical modeling

    Analogical modeling

    Analogical modeling (AM) is a formal theory of exemplar based analogical reasoning, proposed by Royal Skousen, professor of Linguistics and English language at Brigham Young University in Provo, Utah. It is applicable to language modeling and other categorization tasks. Analogical modeling is related to connectionism and nearest neighbor approaches, in that it is data-based rather than abstraction-based; but it is distinguished by its ability to cope with imperfect datasets (such as caused by simulated short term memory limits) and to base predictions on all relevant segments of the dataset, whether near or far. In language modeling, AM has successfully predicted empirically valid forms for which no theoretical explanation was known (see the discussion of Finnish morphology in Skousen et al. 2002). == Implementation == === Overview === An exemplar-based model consists of a general-purpose modeling engine and a problem-specific dataset. Within the dataset, each exemplar (a case to be reasoned from, or an informative past experience) appears as a feature vector: a row of values for the set of parameters that define the problem. For example, in a spelling-to-sound task, the feature vector might consist of the letters of a word. Each exemplar in the dataset is stored with an outcome, such as a phoneme or phone to be generated. When the model is presented with a novel situation (in the form of an outcome-less feature vector), the engine algorithmically sorts the dataset to find exemplars that helpfully resemble it, and selects one, whose outcome is the model's prediction. The particulars of the algorithm distinguish one exemplar-based modeling system from another. In AM, we think of the feature values as characterizing a context, and the outcome as a behavior that occurs within that context. Accordingly, the novel situation is known as the given context. Given the known features of the context, the AM engine systematically generates all contexts that include it (all of its supracontexts), and extracts from the dataset the exemplars that belong to each. The engine then discards those supracontexts whose outcomes are inconsistent (this measure of consistency will be discussed further below), leaving an analogical set of supracontexts, and probabilistically selects an exemplar from the analogical set with a bias toward those in large supracontexts. This multilevel search exponentially magnifies the likelihood of a behavior's being predicted as it occurs reliably in settings that specifically resemble the given context. === Analogical modeling in detail === AM performs the same process for each case it is asked to evaluate. The given context, consisting of n variables, is used as a template to generate 2 n {\displaystyle 2^{n}} supracontexts. Each supracontext is a set of exemplars in which one or more variables have the same values that they do in the given context, and the other variables are ignored. In effect, each is a view of the data, created by filtering for some criteria of similarity to the given context, and the total set of supracontexts exhausts all such views. Alternatively, each supracontext is a theory of the task or a proposed rule whose predictive power needs to be evaluated. It is important to note that the supracontexts are not equal peers one with another; they are arranged by their distance from the given context, forming a hierarchy. If a supracontext specifies all of the variables that another one does and more, it is a subcontext of that other one, and it lies closer to the given context. (The hierarchy is not strictly branching; each supracontext can itself be a subcontext of several others, and can have several subcontexts.) This hierarchy becomes significant in the next step of the algorithm. The engine now chooses the analogical set from among the supracontexts. A supracontext may contain exemplars that only exhibit one behavior; it is deterministically homogeneous and is included. It is a view of the data that displays regularity, or a relevant theory that has never yet been disproven. A supracontext may exhibit several behaviors, but contain no exemplars that occur in any more specific supracontext (that is, in any of its subcontexts); in this case it is non-deterministically homogeneous and is included. Here there is no great evidence that a systematic behavior occurs, but also no counterargument. Finally, a supracontext may be heterogeneous, meaning that it exhibits behaviors that are found in a subcontext (closer to the given context), and also behaviors that are not. Where the ambiguous behavior of the nondeterministically homogeneous supracontext was accepted, this is rejected because the intervening subcontext demonstrates that there is a better theory to be found. The heterogeneous supracontext is therefore excluded. This guarantees that we see an increase in meaningfully consistent behavior in the analogical set as we approach the given context. With the analogical set chosen, each appearance of an exemplar (for a given exemplar may appear in several of the analogical supracontexts) is given a pointer to every other appearance of an exemplar within its supracontexts. One of these pointers is then selected at random and followed, and the exemplar to which it points provides the outcome. This gives each supracontext an importance proportional to the square of its size, and makes each exemplar likely to be selected in direct proportion to the sum of the sizes of all analogically consistent supracontexts in which it appears. Then, of course, the probability of predicting a particular outcome is proportional to the summed probabilities of all the exemplars that support it. (Skousen 2002, in Skousen et al. 2002, pp. 11–25, and Skousen 2003, both passim) === Formulas === Given a context with n {\displaystyle n} elements: total number of pairings: n 2 {\displaystyle n^{2}} number of agreements for outcome i: n i 2 {\displaystyle n_{i}^{2}} number of disagreements for outcome i: n i ( n − n i ) {\displaystyle n_{i}(n-n_{i})} total number of agreements: ∑ n i 2 {\displaystyle \sum {n_{i}^{2}}} total number of disagreements: ∑ n i ( n − n i ) = n 2 − ∑ n i 2 {\displaystyle \sum {n_{i}(n-n_{i})}=n^{2}-\sum {n_{i}^{2}}} === Example === This terminology is best understood through an example. In the example used in the second chapter of Skousen (1989), each context consists of three variables with potential values 0-3 Variable 1: 0,1,2,3 Variable 2: 0,1,2,3 Variable 3: 0,1,2,3 The two outcomes for the dataset are e and r, and the exemplars are: 3 1 0 e 0 3 2 r 2 1 0 r 2 1 2 r 3 1 1 r We define a network of pointers like so: The solid lines represent pointers between exemplars with matching outcomes; the dotted lines represent pointers between exemplars with non-matching outcomes. The statistics for this example are as follows: n = 5 {\displaystyle n=5} n r = 4 {\displaystyle n_{r}=4} n e = 1 {\displaystyle n_{e}=1} total number of pairings: n 2 = 25 {\displaystyle n^{2}=25} number of agreements for outcome r: n r 2 = 16 {\displaystyle n_{r}^{2}=16} number of agreements for outcome e: n e 2 = 1 {\displaystyle n_{e}^{2}=1} number of disagreements for outcome r: n r ( n − n r ) = 4 {\displaystyle n_{r}(n-n_{r})=4} number of disagreements for outcome e: n e ( n − n e ) = 4 {\displaystyle n_{e}(n-n_{e})=4} total number of agreements: n r 2 + n e 2 = 17 {\displaystyle n_{r}^{2}+n_{e}^{2}=17} total number of disagreements: n r ( n − n r ) + n e ( n − n e ) = n 2 − ( n r 2 + n e 2 ) = 8 {\displaystyle n_{r}(n-n_{r})+n_{e}(n-n_{e})=n^{2}-(n_{r}^{2}+n_{e}^{2})=8} uncertainty or fraction of disagreement: 8 / 25 = .32 {\displaystyle 8/25=.32} Behavior can only be predicted for a given context; in this example, let us predict the outcome for the context "3 1 2". To do this, we first find all of the contexts containing the given context; these contexts are called supracontexts. We find the supracontexts by systematically eliminating the variables in the given context; with m variables, there will generally be 2 m {\displaystyle 2^{m}} supracontexts. The following table lists each of the sub- and supracontexts; x means "not x", and - means "anything". These contexts are shown in the venn diagram below: The next step is to determine which exemplars belong to which contexts in order to determine which of the contexts are homogeneous. The table below shows each of the subcontexts, their behavior in terms of the given exemplars, and the number of disagreements within the behavior: Analyzing the subcontexts in the table above, we see that there is only 1 subcontext with any disagreements: "3 1 2", which in the dataset consists of "3 1 0 e" and "3 1 1 r". There are 2 disagreements in this subcontext; 1 pointing from each of the exemplars to the other (see the pointer network pictured above). Therefore, only supracontexts containing this subcontext will contain any disagreements. We use a simple rule to identify the homogeneous supraco

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