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  • Commission on Enhancing National Cybersecurity

    Commission on Enhancing National Cybersecurity

    The President's Commission on Enhancing National Cybersecurity is a Presidential Commission formed on April 13, 2016, to develop a plan for protecting cyberspace, and America's economic reliance on it. The commission released its final report in December 2016. The report made recommendations regarding the intertwining roles of the military, government administration and the private sector in providing cyber security. Chairman Donilon said of the report that its coverage "is unusual in the breadth of issues" with which it deals. == Recommendations == The report made sixteen major recommendations with fifty-three specific action items broadly grouped under six areas: Protecting the information and digital infrastructure Investing in the secure growth of information and digital infrastructure Consumer information access Building the cybersecurity workforce Building a secure governmental cybersecurity framework Keeping interconnectivity open, fair, competitive, and secure The Commission found that strong authentication systems were mandatory for adequate cybersecurity, not just for the government, but for all commercial systems, and private individuals. The commission also stressed remote identity proofing and security for the Internet of things (IoT). Finding that technicians who know cybersecurity and can protect systems are few and in short supply, the commission recommended nationally supported training programs to produce an adequate workforce, as well as increasing the level of expertise in the existing workforce. The Commission highlighted the importance of partnerships between government and the private sector as a powerful tool for encouraging the technology, policies and practices we need to secure and grow the digital economy. (page 2) Some criticised the commission's work as lacking an understanding of cybersecurity and not being cognizant of "cyber reality" and the cost of some of the action items, but others found the report constructive and meaningful. == Commission members == The initial members of the Commission are: Tom Donilon, former Assistant to the President and National Security Advisor (Chair) Sam Palmisano, former CEO of IBM (Vice Chair) General Keith Alexander, CEO of IronNet Cybersecurity, former Director of the National Security Agency and former Commander of U.S. Cyber Command Annie Antón, Professor and Chair of the School of Interactive Computing at Georgia Tech. Ajay Banga, President and CEO of MasterCard Steven Chabinsky, General Counsel and Chief Risk Officer of CrowdStrike Patrick Gallagher, Chancellor of the University of Pittsburgh and former Director of the National Institute of Standards and Technology Peter Lee, Corporate Vice President, Microsoft Research Herbert Lin, Senior Research Scholar for Cyber Policy and Security at the Stanford Center for International Security and Cooperation and Research Fellow at the Hoover Institution Heather Murren, former member of the Financial Crisis Inquiry Commission and co-founder of the Nevada Cancer Institute Joe Sullivan, Chief Security Officer of Uber and former Chief Security Officer of Facebook Maggie Wilderotter, Executive Chairman of Frontier Communications == Follow-on == Incoming President Trump has indicated that he wants a full review of U.S. cyber protection policy. == Notes and references ==

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  • The Best Free AI Voice Assistant for Beginners

    The Best Free AI Voice Assistant for Beginners

    Looking for the best AI voice assistant? An AI voice assistant is software that uses machine learning to help you get more done — it can save you hours every week by automating repetitive work. Most options offer a generous free tier, with paid plans unlocking higher limits, faster processing, and team features. Whether you are a beginner or a pro, the right AI voice assistant slots into your workflow and pays for itself fast. This guide breaks down the top picks, their pros and cons, and who each one is best for.

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  • The Best Free AI Coding Assistant for Beginners

    The Best Free AI Coding Assistant for Beginners

    Trying to pick the best AI coding assistant? An AI coding assistant is software that uses machine learning to help you get more done — it scales effortlessly from a single task to thousands. The best picks balance beginner-friendly simplicity with the depth power users need, and they ship updates often. Whether you are a beginner or a pro, the right AI coding assistant slots into your workflow and pays for itself fast. Read on for hands-on impressions, pricing tiers, and the standout features that matter.

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  • Corpus manager

    Corpus manager

    A corpus manager (corpus browser or corpus query system) is a tool for multilingual corpus analysis, which allows effective searching in corpora. A corpus manager usually represents a complex tool that allows one to perform searches for language forms or sequences. It may provide information about the context or allow the user to search by positional attributes, such as lemma, tag, etc. These are called concordances. Other features include the ability to search for collocations, frequency statistics as well as metadata information about the processed text. The narrower meaning of corpus manager refers only to the server side or the corpus query engine, whereas the client side is simply called the user interface. A corpus manager can be software installed on a personal computer or it might be provided as a web service. == List of corpus managers == BNCweb – a web-based interface for the British National Corpus CQPweb - a web-based interface for the study of a large variety of corpora including the Spoken BNC2014 BYU-BNC – a website that allows searches of the British National Corpora and others created at Brigham Young University Coma – a tool extension of the system EXMARaLDA for working with oral corpora on a computer NoSketch Engine – a free open-source corpus management system combining Manatee (back-end) and Bonito (web interface) KonText – an extended and modified web interface to NoSketch Engine (a Bonito replacement) Sketch Engine – text corpus management and analysis software with more than 500 corpora in 90+ languages Spoco WordSmith Tools – a software package primarily for linguists

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  • Sycophancy (artificial intelligence)

    Sycophancy (artificial intelligence)

    In the field of artificial intelligence, sycophancy is a tendency of large language models (LLMs) and other AI assistants to tailor their responses to what they predict the user wants to hear rather than to what is accurate or warranted. The behavior takes several forms: an assistant may agree with a user's stated opinion even when the user is mistaken; it may abandon a correct answer after a challenge such as "are you sure?"; it may validate beliefs, decisions or self-presentation regardless of merit; or it may praise the user, their work or their ideas in unwarranted terms. The word is borrowed from the ordinary English term for fawning flattery, and is used in AI alignment and AI safety research to describe a class of misalignment failures associated with training on human feedback. Researchers at Anthropic first documented the behavior systematically in 2022. They found that models fine-tuned with reinforcement learning from human feedback (RLHF) were more likely than untuned models to repeat back a user's preferred answer. A 2023 follow-up paper, "Towards Understanding Sycophancy in Language Models", showed that five frontier assistants from OpenAI, Anthropic and Meta all exhibited the behavior, and traced its origin to biases in the human preference data used during training. Later work documented sycophancy in mathematics, medicine, academic peer review and other domains, and identified a broader category called "social sycophancy" affecting an assistant's emotional and interpersonal responses. The issue drew widespread public attention in April 2025 after OpenAI rolled back an update to its GPT-4o model. Users had reported that the assistant praised dangerous decisions, endorsed delusional thinking and offered exaggerated compliments for trivial prompts. OpenAI's post-mortem attributed the change in behavior to an additional training signal based on user thumbs-up and thumbs-down feedback. That episode, together with reporting in The New York Times, Rolling Stone and elsewhere on users drawn into delusional thinking through prolonged chatbot interaction, has been cited in litigation and in academic studies as evidence that sycophancy poses risks to user well-being. Proposed mitigations include fine-tuning on synthetic data that rewards disagreement with incorrect user statements, editing the small subset of model parameters causally responsible for the behavior, changes to the dialogue or system prompt, and benchmarks designed to surface sycophantic behavior before models are released. == Causes == The dominant explanation points to RLHF, the standard technique for aligning chat assistants with user expectations. Human annotators rank candidate model responses; a reward model is trained to predict those rankings; and the language model is then optimized against the reward model. Because human raters tend to prefer outputs that confirm their existing beliefs or flatter their work, the pipeline systematically rewards responses that agree with the annotator. Perez and colleagues at Anthropic published the first large-scale empirical evidence of the effect in 2022. They reported that RLHF training increased the probability that a model would repeat back a dialog user's preferred answer, and that larger models exhibited the behavior more strongly. Sharma and colleagues, the following year, went further and examined Anthropic's own preference data directly. Both the human raters and the reward models trained on their judgments preferred convincingly written sycophantic responses to truthful ones at a non-negligible rate. Wei and co-authors at Google DeepMind found similar results in the PaLM family, observing that both model scale and instruction tuning increased sycophancy on opinion questions. The behavior is often classified as a form of reward hacking, in which an optimization process exploits a flaw in its reward signal rather than achieving the intended objective. OpenAI's post-mortem of the April 2025 GPT-4o incident identified a more specific mechanism. An additional reward signal based on aggregated thumbs-up and thumbs-down feedback from ChatGPT users had, in OpenAI's words, "weakened the influence of our primary reward signal, which had been holding sycophancy in check." Separately, an Anthropic interpretability paper from 2025 located a linear direction in a model's internal activations corresponding to sycophantic behavior, and showed that such "persona vectors" could be used to flag sycophancy-inducing training data and to steer models away from the trait at inference time. == Measurement == The Anthropic team released SycophancyEval with its 2023 paper, supplying test sets for each of the four canonical behaviors. Two further benchmarks from Stanford followed in 2025. SycEval, applied to mathematical and medical reasoning tasks, reported an overall sycophancy rate of 58 per cent across the GPT-4o, Claude and Gemini models tested. ELEPHANT, aimed at social sycophancy, found that the eleven LLMs evaluated affirmed posts that the Reddit community r/AmITheAsshole had judged inappropriate in 42 per cent of cases, and preserved a user's face 45 percentage points more often than human respondents did. Domain-specific benchmarks have followed. BrokenMath tests robustness to plausible-looking but false mathematical claims drawn from competition problems, and reports that the best evaluated model was sycophantic in 29 per cent of cases. SYCON-Bench measures how many dialogue turns are required before a model abandons a correct position. Visual sycophancy in multimodal models has been examined with MM-SY and PENDULUM. A 2026 study by researchers at the Massachusetts Institute of Technology reported that personalization features, which adapt assistants to individual users over repeated sessions, can intensify social sycophancy. == Notable incidents == === GPT-4o rollback (April 2025) === On 25 April 2025, OpenAI completed the rollout of an update to GPT-4o, the default model used in ChatGPT at the time. Within days, users reported that the assistant had begun praising trivial messages in extravagant terms, endorsing impulsive or dangerous decisions, and reinforcing strong emotional statements without pushback. Widely shared examples included the model congratulating a user who reported stopping prescribed psychiatric medication, and praising a business plan to sell "shit on a stick" as venture-capital ready. OpenAI's chief executive, Sam Altman, wrote on 27 April that recent updates had made the model "too sycophant-y and annoying" and said fixes were in progress. The company began reverting the update on 28 April and completed the rollback for free users by 30 April. Two post-mortems followed: a short note on 29 April and a longer technical follow-up, "Expanding on what we missed with sycophancy", on 2 May. Both attributed the regression to a new training signal based on user thumbs-up and thumbs-down feedback, to inadequate pre-launch evaluation for sycophantic drift, and to the dismissal of qualitative concerns raised by internal testers before release. Reporting in CNN, Fortune and Bloomberg News treated the incident as a turning point in public awareness of the problem. === Chatbot-related psychological harm === From mid-2025 onward, news reports began to link sycophantic chatbot behavior to acute psychological harm. In June 2025, The New York Times technology reporter Kashmir Hill published an investigation centered on Eugene Torres, a Manhattan accountant with no history of mental illness, who developed a sustained delusional episode after a series of conversations with ChatGPT about simulation theory. According to the article, the assistant encouraged Torres to stop taking prescribed medication, to cut off friends and family, and at one point told him that he could fly from a nineteen-story building if he "truly believed". Futurism and Rolling Stone ran parallel investigations documenting other cases in which heavy use of ChatGPT had been associated with delusional thinking, involuntary commitment or, in at least one case, the death of a user with a pre-existing psychiatric diagnosis. A 2026 paper by researchers at the Massachusetts Institute of Technology and the University of Washington put forward a formal Bayesian model. It showed that even an ideally rational user could be drawn into what the authors call "delusional spiraling" when interacting with a sufficiently sycophantic assistant, and that the effect was not eliminated by suppressing hallucinations or by warning users in advance. The lawsuit Raine v. OpenAI, filed in San Francisco Superior Court in August 2025 by the parents of a sixteen-year-old who had died by suicide, alleges that "heightened sycophancy" was a design feature of ChatGPT that contributed to their son's death; it is the first wrongful-death suit against a large language-model provider. === Wider commentary === Mainstream coverage in outlets including The New York Times, The Washington Pos

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  • AI Humanizers Reviews: What Actually Works in 2026

    AI Humanizers Reviews: What Actually Works in 2026

    Curious about the best AI humanizer? An AI humanizer is software that uses machine learning to help you get more done — it combines speed, accuracy, and an interface that just works. Hands-on testing shows real-world results vary, so a short free trial is the smartest way to decide. Whether you are a beginner or a pro, the right AI humanizer slots into your workflow and pays for itself fast. Read on for hands-on impressions, pricing tiers, and the standout features that matter.

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  • Clement Farabet

    Clement Farabet

    Clément Farabet is a computer scientist and AI expert known for his contributions to the field of deep learning. He served as a research scientist at the New York University. He serves as the Vice President of Research at Google DeepMind and previously served as the VP of AI Infrastructure at NVIDIA. His scholarly work received over 11,000 citations with an h-index of 21. == Education == In 2008, Farabet earned a master's degree in electrical engineering with honors from Institut national des sciences appliquées (INSA) de Lyon, France. In 2010, Farabet received his PhD at Université Paris-Est, co-advised by Professors Laurent Najman and Yann LeCun. His thesis focused on real-time image understanding and introduced multi-scale convolutional networks and graph-based techniques for efficient segmentations of class prediction maps. He successfully defended his thesis in 2013. == Career == In 2008, after completing his Master's degree, Farabet joined Professor Yann LeCun's laboratory at the Courant Institute of Mathematical Sciences at New York University. His Master's thesis work on reconfigurable hardware for deep neural networks resulted in a patent. He continued his collaboration with Yann LeCun, and in 2009, he began working with Yale University's e-Lab, led by Eugenio Culurciello. This collaboration eventually led to the creation of TeraDeep. He began his career as a researcher, contributing to the development of LuaTorch, one of the first AI frameworks, which later evolved into PyTorch, widely recognized and adopted globally. == Startups == Farabet co-founded MadBits, a startup with a focus on web-scale image understanding. The company was acquired by Twitter in 2014. Following this acquisition, Farabet co-founded Twitter Cortex, a team dedicated to building Twitter's deep learning platform for various applications, including recommendations, search, spam detection, and NSFW content and ads. == Publications == Farabet, Clement; Couprie, Camille; Najman, Laurent; LeCun, Yann (August 2013). "Learning Hierarchical Features for Scene Labeling". IEEE Transactions on Pattern Analysis and Machine Intelligence. 35 (8): 1915–1929. Bibcode:2013ITPAM..35.1915F. doi:10.1109/TPAMI.2012.231. PMID 23787344. S2CID 206765110. LeCun, Yann; Kavukcuoglu, Koray; Farabet, Clement (2010). "Convolutional networks and applications in vision". Proceedings of 2010 IEEE International Symposium on Circuits and Systems. pp. 253–256. doi:10.1109/ISCAS.2010.5537907. ISBN 978-1-4244-5308-5. S2CID 7625356. Collobert, Ronan; Kavukcuoglu, K.; Farabet, C. (2011). "Torch7: A Matlab-like Environment for Machine Learning". Neural Information Processing Systems. Couprie, Camille; Farabet, Clément; Najman, Laurent; LeCun, Yann (16 January 2013). "Indoor Semantic Segmentation using depth information". arXiv:1301.3572 [cs.CV]. Farabet, Clement (2011). "NeuFlow: A runtime reconfigurable dataflow processor for vision". CVPR 2011 Workshops. pp. 109–116. doi:10.1109/CVPRW.2011.5981829. ISBN 978-1-4577-0529-8. S2CID 851574. Farabet, Clement (2009). "CNP: An FPGA-based processor for Convolutional Networks". 2009 International Conference on Field Programmable Logic and Applications. pp. 32–37. doi:10.1109/FPL.2009.5272559. S2CID 5339694. Farabet, Clement (2010). "Hardware accelerated convolutional neural networks for synthetic vision systems". Proceedings of 2010 IEEE International Symposium on Circuits and Systems. pp. 257–260. doi:10.1109/ISCAS.2010.5537908. ISBN 978-1-4244-5308-5. S2CID 6542026.

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  • StarDict

    StarDict

    StarDict, developed by Hu Zheng (胡正), is a free GUI released under the GPL-3.0-or-later license for accessing StarDict dictionary files (a dictionary shell). It is the successor of StarDic, developed by Ma Su'an (馬蘇安), continuing its version numbers. According to StarDict's earlier homepage on SourceForge, the project has been removed from SourceForge due to copyright infringement reports. It moved to Google Code and then back to SourceForge, while development is now seemingly continued on GitHub. == Supported platforms == StarDict runs under Linux, Windows, FreeBSD, Maemo and Solaris. Dictionaries of the user's choice are installed separately. Dictionary files can be created by converting dict files. Several programs compatible with the StarDict dictionary format are available for different platforms. For the iPhone, iPod Touch and iPad, applications available in the App Store include GuruDic, TouchDict, weDict, Dictionary Universal, Alpus and others, as well as the free iStarDict, which is available for the Cydia Store. == Dictionaries available == One can find here the partial list of FreeDict dictionaries which can be converted to the StarDict format. These include, in particular, some older versions of Webster's dictionary and many dictionaries for various languages. == Features == While StarDict is in scan mode, results are displayed in a tooltip, allowing easy dictionary lookup. When combined with Freedict, StarDict will quickly provide rough translations of foreign language websites. On September 25, 2006, an online version of Stardict began operation. This online version includes access to all the major dictionaries of StarDict, as well as Wikipedia in Chinese. Previous versions of StarDict were very similar to the PowerWord dictionary program, which is developed by a Chinese company, KingSoft. Since version 2.4.2, however, StarDict has diverged from the design of PowerWord by increasing its search capabilities and adding lexicons in a variety of languages. This was assisted by the collaboration of many developers with the author. == sdcv == Evgeniy A. Dushistov produced a command line version of StarDict called sdcv. It employed all the dictionary files that belong to StarDict. It is written in C++ and licensed under the terms of the GNU General Public License. sdcv runs under Linux, FreeBSD, and Solaris. As in StarDict, dictionaries of the user's choice have to be installed separately. At the end of 2006, software developer Hu Zheng cited personal financial problems as an excuse to charge users for downloading dictionary files from his website, which temporarily aroused strong doubts and dissatisfaction in the Linux community. In the end, under the pressure of public opinion, the charging plan was forced to be canceled and ended hastily.

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  • Tensor glyph

    Tensor glyph

    In scientific visualization a tensor glyph is an object that can visualize all or most of the nine degrees of freedom, such as acceleration, twist, or shear – of a 3 × 3 {\displaystyle 3\times 3} matrix. It is used for tensor field visualization, where a data-matrix is available at every point in the grid. "Glyphs, or icons, depict multiple data values by mapping them onto the shape, size, orientation, and surface appearance of a base geometric primitive." Tensor glyphs are a particular case of multivariate data glyphs. There are certain types of glyphs that are commonly used: Ellipsoid Cuboid Cylindrical Superquadrics According to Thomas Schultz and Gordon Kindlmann, specific types of tensor fields "play a central role in scientific and biomedical studies as well as in image analysis and feature-extraction methods."

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  • AI Code Generators Reviews: What Actually Works in 2026

    AI Code Generators Reviews: What Actually Works in 2026

    Trying to pick the best AI code generator? An AI code generator is software that uses machine learning to help you get more done — it scales effortlessly from a single task to thousands. The best picks balance beginner-friendly simplicity with the depth power users need, and they ship updates often. Whether you are a beginner or a pro, the right AI code generator slots into your workflow and pays for itself fast. This guide breaks down the top picks, their pros and cons, and who each one is best for.

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  • Co-Büchi automaton

    Co-Büchi automaton

    In automata theory, a co-Büchi automaton is a variant of Büchi automaton. The only difference is the accepting condition: a Co-Büchi automaton accepts an infinite word w {\displaystyle w} if there exists a run, such that all the states occurring infinitely often in the run are in the final state set F {\displaystyle F} . In contrast, a Büchi automaton accepts a word w {\displaystyle w} if there exists a run, such that at least one state occurring infinitely often in the final state set F {\displaystyle F} . (Deterministic) Co-Büchi automata are strictly weaker than (nondeterministic) Büchi automata. == Formal definition == Formally, a deterministic co-Büchi automaton is a tuple A = ( Q , Σ , δ , q 0 , F ) {\displaystyle {\mathcal {A}}=(Q,\Sigma ,\delta ,q_{0},F)} that consists of the following components: Q {\displaystyle Q} is a finite set. The elements of Q {\displaystyle Q} are called the states of A {\displaystyle {\mathcal {A}}} . Σ {\displaystyle \Sigma } is a finite set called the alphabet of A {\displaystyle {\mathcal {A}}} . δ : Q × Σ → Q {\displaystyle \delta :Q\times \Sigma \rightarrow Q} is the transition function of A {\displaystyle {\mathcal {A}}} . q 0 {\displaystyle q_{0}} is an element of Q {\displaystyle Q} , called the initial state. F ⊆ Q {\displaystyle F\subseteq Q} is the final state set. A {\displaystyle {\mathcal {A}}} accepts exactly those words w {\displaystyle w} with the run ρ ( w ) {\displaystyle \rho (w)} , in which all of the infinitely often occurring states in ρ ( w ) {\displaystyle \rho (w)} are in F {\displaystyle F} . In a non-deterministic co-Büchi automaton, the transition function δ {\displaystyle \delta } is replaced with a transition relation Δ {\displaystyle \Delta } . The initial state q 0 {\displaystyle q_{0}} is replaced with an initial state set Q 0 {\displaystyle Q_{0}} . Generally, the term co-Büchi automaton refers to the non-deterministic co-Büchi automaton. For more comprehensive formalism see also ω-automaton. == Acceptance Condition == The acceptance condition of a co-Büchi automaton is formally ∃ i ∀ j : j ≥ i ρ ( w j ) ∈ F . {\displaystyle \exists i\forall j:\;j\geq i\quad \rho (w_{j})\in F.} The Büchi acceptance condition is the complement of the co-Büchi acceptance condition: ∀ i ∃ j : j ≥ i ρ ( w j ) ∈ F . {\displaystyle \forall i\exists j:\;j\geq i\quad \rho (w_{j})\in F.} == Properties == Co-Büchi automata are closed under union, intersection, projection and determinization.

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  • GLIMMER

    GLIMMER

    In bioinformatics, GLIMMER (Gene Locator and Interpolated Markov ModelER) is used to find genes in prokaryotic DNA. "It is effective at finding genes in bacteria, archea, viruses, typically finding 98-99% of all relatively long protein coding genes". GLIMMER was the first system that used the interpolated Markov model to identify coding regions. The GLIMMER software is open source and is maintained by Steven Salzberg, Art Delcher, and their colleagues at the Center for Computational Biology at Johns Hopkins University. The original GLIMMER algorithms and software were designed by Art Delcher, Simon Kasif and Steven Salzberg and applied to bacterial genome annotation in collaboration with Owen White. == Versions == === GLIMMER 1.0 === First Version of GLIMMER "i.e., GLIMMER 1.0" was released in 1998 and it was published in the paper Microbial gene identification using interpolated Markov model. Markov models were used to identify microbial genes in GLIMMER 1.0. GLIMMER considers the local composition sequence dependencies which makes GLIMMER more flexible and more powerful when compared to fixed-order Markov model. There was a comparison made between interpolated Markov model used by GLIMMER and fifth order Markov model in the paper Microbial gene identification using interpolated Markov models. "GLIMMER algorithm found 1680 genes out of 1717 annotated genes in Haemophilus influenzae where fifth order Markov model found 1574 genes. GLIMMER found 209 additional genes which were not included in 1717 annotated genes where fifth order Markov model found 104 genes."' === GLIMMER 2.0 === Second Version of GLIMMER i.e., GLIMMER 2.0 was released in 1999 and it was published in the paper Improved microbial identification with GLIMMER. This paper provides significant technical improvements such as using interpolated context model instead of interpolated Markov model and resolving overlapping genes which improves the accuracy of GLIMMER. Interpolated context models are used instead of interpolated Markov model which gives the flexibility to select any base. In interpolated Markov model probability distribution of a base is determined from the immediate preceding bases. If the immediate preceding base is irrelevant amino acid translation, interpolated Markov model still considers the preceding base to determine the probability of given base where as interpolated context model which was used in GLIMMER 2.0 can ignore irrelevant bases. False positive predictions were increased in GLIMMER 2.0 to reduce the number of false negative predictions. Overlapped genes are also resolved in GLIMMER 2.0. Various comparisons between GLIMMER 1.0 and GLIMMER 2.0 were made in the paper Improved microbial identification with GLIMMER which shows improvement in the later version. "Sensitivity of GLIMMER 1.0 ranges from 98.4 to 99.7% with an average of 99.1% where as GLIMMER 2.0 has a sensitivity range from 98.6 to 99.8% with an average of 99.3%. GLIMMER 2.0 is very effective in finding genes of high density. The parasite Trypanosoma brucei, responsible for causing African sleeping sickness is being identified by GLIMMER 2.0" === GLIMMER 3.0 === Third version of GLIMMER, "GLIMMER 3.0" was released in 2007 and it was published in the paper Identifying bacterial genes and endosymbiont DNA with Glimmer. This paper describes several major changes made to the GLIMMER system including improved methods to identify coding regions and start codon. Scoring of ORF in GLIMMER 3.0 is done in reverse order i.e., starting from stop codon and moves back towards the start codon. Reverse scanning helps in identifying the coding portion of the gene more accurately which is contained in the context window of IMM. GLIMMER 3.0 also improves the generated training set data by comparing the long-ORF with universal amino acid distribution of widely disparate bacterial genomes."GLIMMER 3.0 has an average long-ORF output of 57% for various organisms where as GLIMMER 2.0 has an average long-ORF output of 39%." GLIMMER 3.0 reduces the rate of false positive predictions which were increased in GLIMMER 2.0 to reduce the number of false negative predictions. "GLIMMER 3.0 has a start-site prediction accuracy of 99.5% for 3'5' matches where as GLIMMER 2.0 has 99.1% for 3'5' matches. GLIMMER 3.0 uses a new algorithm for scanning coding regions, a new start site detection module, and architecture which integrates all gene predictions across an entire genome." Minimum description length === Theoretical and Biological Foundation === The GLIMMER project helped introduce and popularize the use of variable length models in Computational Biology and Bioinformatics that subsequently have been applied to numerous problems such as protein classification and others. Variable length modeling was originally pioneered by information theorists and subsequently ingeniously applied and popularized in data compression (e.g. Ziv-Lempel compression). Prediction and compression are intimately linked using Minimum Description Length Principles. The basic idea is to create a dictionary of frequent words (motifs in biological sequences). The intuition is that the frequently occurring motifs are likely to be most predictive and informative. In GLIMMER the interpolated model is a mixture model of the probabilities of these relatively common motifs. Similarly to the development of HMMs in Computational Biology, the authors of GLIMMER were conceptually influenced by the previous application of another variant of interpolated Markov models to speech recognition by researchers such as Fred Jelinek (IBM) and Eric Ristad (Princeton). The learning algorithm in GLIMMER is different from these earlier approaches. == Access == GLIMMER can be downloaded from The Glimmer home page (requires a C++ compiler). Alternatively, an online version is hosted by NCBI [1]. == How it works == GLIMMER primarily searches for long-ORFS. An open reading frame might overlap with any other open reading frame which will be resolved using the technique described in the sub section. Using these long-ORFS and following certain amino acid distribution GLIMMER generates training set data. Using these training data, GLIMMER trains all the six Markov models of coding DNA from zero to eight order and also train the model for noncoding DNA GLIMMER tries to calculate the probabilities from the data. Based on the number of observations, GLIMMER determines whether to use fixed order Markov model or interpolated Markov model. If the number of observations are greater than 400, GLIMMER uses fixed order Markov model to obtain there probabilities. If the number of observations are less than 400, GLIMMER uses interpolated Markov model which is briefly explained in the next sub section. GLIMMER obtains score for every long-ORF generated using all the six coding DNA models and also using non-coding DNA model. If the score obtained in the previous step is greater than a certain threshold then GLIMMER predicts it to be a gene. The steps explained above describes the basic functionality of GLIMMER. There are various improvements made to GLIMMER and some of them are described in the following sub-sections. === The GLIMMER system === GLIMMER system consists of two programs. First program called build-imm, which takes an input set of sequences and outputs the interpolated Markov model as follows. The probability for each base i.e., A,C,G,T for all k-mers for 0 ≤ k ≤ 8 is computed. Then, for each k-mer, GLIMMER computes weight. New sequence probability is computed as follows. where n is the length of the sequence S x {\displaystyle S_{x}} is the oligomer at position x. I M M 8 ( S x ) {\displaystyle IMM_{8}(S_{x})} , the 8 t h {\displaystyle 8^{th}} -order interpolated Markov model score is computed as "where Y k ( S x − 1 ) {\displaystyle Y_{k}(S_{x-1})} is the weight of the k-mer at position x-1 in the sequence S and P k ( S x ) {\displaystyle P_{k}(S_{x})} is the estimate obtained from the training data of the probability of the base located at position x in the k t h {\displaystyle k^{th}} -order model." The probability of base S x {\displaystyle S_{x}} given the i previous bases is computed as follows. "The value of Y i ( S x ) {\displaystyle Y_{i}(S_{x})} associated with P i ( S x ) {\displaystyle P_{i}(S_{x})} can be regarded as a measure of confidence in the accuracy of this value as an estimate of the true probability. GLIMMER uses two criteria to determine Y i ( S x ) {\displaystyle Y_{i}(S_{x})} . The first of these is simple frequency occurrence in which the number of occurrences of context string S x , i {\displaystyle S_{x,i}} in the training data exceeds a specific threshold value, then Y i ( S x ) {\displaystyle Y_{i}(S_{x})} is set to 1.0. The current default value for threshold is 400, which gives 95% confidence. When there are insufficient sample occurrences of a context string, build-imm employ additional criteria to determine Y {\displaystyle Y} value. For a

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  • Colloquis

    Colloquis

    Colloquis, previously known as ActiveBuddy and Conversagent, was a company that created conversation-based interactive agents originally distributed via instant messaging platforms. The company had offices in New York, New York, and Sunnyvale, California. == History == Founded in 2000, the company was the brainchild of Robert Hoffer, Timothy Kay, and Peter Levitan. The idea for interactive agents (also known as Internet bots) came from the team's vision to add functionality to increasingly popular instant messaging services. The original implementation took shape as a word-based adventure game but quickly grew to include a wide range of database applications, including access to news, weather, stock information, movie times, Yellow Pages listings, and detailed sports data, as well as a variety of tools (calculators, translator, etc.). These various applications were bundled into one entity and launched as SmarterChild in 2001. SmarterChild acted as a showcase for the quick data access and possibilities for fun conversation that the company planned to turn into customized, niche-specific products. The rapid success of SmarterChild led to targeted promotional products for Radiohead, Austin Powers, The Sporting News, and others. ActiveBuddy sought to strengthen its hold on the interactive agent market for the future by filing for, and receiving, a controversial patent on their creation in 2002. The company also released the BuddyScript SDK, a free developer kit that allow programmers to design and launch their own interactive agents using ActiveBuddy's proprietary scripting language, in 2002. Ultimately, however, the decline in ad spending in 2001 and 2002 led to a shift in corporate strategy towards business focused Automated Service Agents, building products for clients including Cingular, Comcast and Cox Communications. The company subsequently changed its name from ActiveBuddy to Conversagent in 2003, and then again to Colloquis in 2006. Colloquis was purchased by Microsoft in October 2006.

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  • Regular language

    Regular language

    In theoretical computer science and formal language theory, a regular language (also called a rational language) is a formal language that can be defined by a regular expression, in the strict sense in theoretical computer science (as opposed to many modern regular expression engines, which are augmented with features that allow the recognition of non-regular languages). Alternatively, a regular language can be defined as a language recognised by a finite automaton. The equivalence of regular expressions and finite automata is known as Kleene's theorem (after American mathematician Stephen Cole Kleene). In the Chomsky hierarchy, regular languages are the languages generated by Type-3 grammars. == Formal definition == The collection of regular languages over an alphabet Σ is defined recursively as follows: The empty language ∅ is a regular language. For each a ∈ Σ (a belongs to Σ), the singleton language {a} is a regular language. If A is a regular language, A (Kleene star) is a regular language. Due to this, the empty string language {ε} is also regular. If A and B are regular languages, then A ∪ B (union) and A • B (concatenation) are regular languages. No other languages over Σ are regular. See Regular expression § Formal language theory for syntax and semantics of regular expressions. == Examples == All finite languages are regular; in particular the empty string language {ε} = ∅ is regular. Other typical examples include the language consisting of all strings over the alphabet {a, b} which contain an even number of as, or the language consisting of all strings of the form: several as followed by several bs. A simple example of a language that is not regular is the set of strings {anbn | n ≥ 0}. Intuitively, it cannot be recognized with a finite automaton, since a finite automaton has finite memory and it cannot remember the exact number of a's. Techniques to prove this fact rigorously are given below. == Equivalent formalisms == A regular language satisfies the following equivalent properties: it is the language of a regular expression (by the above definition) it is the language accepted by a nondeterministic finite automaton (NFA) it is the language accepted by a deterministic finite automaton (DFA) it can be generated by a regular grammar it is the language accepted by an alternating finite automaton it is the language accepted by a two-way finite automaton it can be generated by a prefix grammar it can be accepted by a read-only Turing machine it can be defined in monadic second-order logic (Büchi–Elgot–Trakhtenbrot theorem) it is recognized by some finite syntactic monoid M, meaning it is the preimage {w ∈ Σ | f(w) ∈ S} of a subset S of a finite monoid M under a monoid homomorphism f : Σ → M from the free monoid on its alphabet the number of equivalence classes of its syntactic congruence is finite. (This number equals the number of states of the minimal deterministic finite automaton accepting L.) Properties 10. and 11. are purely algebraic approaches to define regular languages; a similar set of statements can be formulated for a monoid M ⊆ Σ. In this case, equivalence over M leads to the concept of a recognizable language. Some authors use one of the above properties different from "1." as an alternative definition of regular languages. Some of the equivalences above, particularly those among the first four formalisms, are called Kleene's theorem in textbooks. Precisely which one (or which subset) is called such varies between authors. One textbook calls the equivalence of regular expressions and NFAs ("1." and "2." above) "Kleene's theorem". Another textbook calls the equivalence of regular expressions and DFAs ("1." and "3." above) "Kleene's theorem". Two other textbooks first prove the expressive equivalence of NFAs and DFAs ("2." and "3.") and then state "Kleene's theorem" as the equivalence between regular expressions and finite automata (the latter said to describe "recognizable languages"). A linguistically oriented text first equates regular grammars ("4." above) with DFAs and NFAs, calls the languages generated by (any of) these "regular", after which it introduces regular expressions which it terms to describe "rational languages", and finally states "Kleene's theorem" as the coincidence of regular and rational languages. Other authors simply define "rational expression" and "regular expressions" as synonymous and do the same with "rational languages" and "regular languages". Apparently, the term regular originates from a 1951 technical report where Kleene introduced regular events and explicitly welcomed "any suggestions as to a more descriptive term". Noam Chomsky, in his 1959 seminal article, used the term regular in a different meaning at first (referring to what is called Chomsky normal form today), but noticed that his finite state languages were equivalent to Kleene's regular events. == Closure properties == The regular languages are closed under various operations, that is, if the languages K and L are regular, so is the result of the following operations: the set-theoretic Boolean operations: union K ∪ L, intersection K ∩ L, and complement L, hence also relative complement K − L. the regular operations: K ∪ L, concatenation ⁠ K ∘ L {\displaystyle K\circ L} ⁠, and Kleene star L. the trio operations: string homomorphism, inverse string homomorphism, and intersection with regular languages. As a consequence they are closed under arbitrary finite state transductions, like quotient K / L with a regular language. Even more, regular languages are closed under quotients with arbitrary languages: If L is regular then L / K is regular for any K. the reverse (or mirror image) LR. Given a nondeterministic finite automaton to recognize L, an automaton for LR can be obtained by reversing all transitions and interchanging starting and finishing states. This may result in multiple starting states; ε-transitions can be used to join them. == Decidability properties == Given two deterministic finite automata A and B, it is decidable whether they accept the same language. As a consequence, using the above closure properties, the following problems are also decidable for arbitrarily given deterministic finite automata A and B, with accepted languages LA and LB, respectively: Containment: is LA ⊆ LB ? Disjointness: is LA ∩ LB = {} ? Emptiness: is LA = {} ? Universality: is LA = Σ ? Membership: given a ∈ Σ, is a ∈ LB ? For regular expressions, the universality problem is NP-complete already for a singleton alphabet. For larger alphabets, that problem is PSPACE-complete. If regular expressions are extended to allow also a squaring operator, with "A2" denoting the same as "AA", still just regular languages can be described, but the universality problem has an exponential space lower bound, and is in fact complete for exponential space with respect to polynomial-time reduction. For a fixed finite alphabet, the theory of the set of all languages – together with strings, membership of a string in a language, and for each character, a function to append the character to a string (and no other operations) – is decidable, and its minimal elementary substructure consists precisely of regular languages. For a binary alphabet, the theory is called S2S. == Complexity results == In computational complexity theory, the complexity class of all regular languages is sometimes referred to as REGULAR or REG and equals DSPACE(O(1)), the decision problems that can be solved in constant space (the space used is independent of the input size). REGULAR ≠ AC0, since it (trivially) contains the parity problem of determining whether the number of 1 bits in the input is even or odd and this problem is not in AC0. On the other hand, REGULAR does not contain AC0, because the nonregular language of palindromes, or the nonregular language { 0 n 1 n : n ∈ N } {\displaystyle \{0^{n}1^{n}:n\in \mathbb {N} \}} can both be recognized in AC0. If a language is not regular, it requires a machine with at least Ω(log log n) space to recognize (where n is the input size). In other words, DSPACE(o(log log n)) equals the class of regular languages. In practice, most nonregular problems are studied in a setting with at least logarithmic space, as this is the amount of space required to store a pointer into the input tape. == Location in the Chomsky hierarchy == To locate the regular languages in the Chomsky hierarchy, one notices that every regular language is context-free. The converse is not true: for example, the language consisting of all strings having the same number of as as bs is context-free but not regular. To prove that a language is not regular, one often uses the Myhill–Nerode theorem and the pumping lemma. Other approaches include using the closure properties of regular languages or quantifying Kolmogorov complexity. Important subclasses of regular languages include: Finite languages, those containing only a finite number of words. These are regular la

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  • General Regionally Annotated Corpus of Ukrainian

    General Regionally Annotated Corpus of Ukrainian

    General Regionally Annotated Corpus of the Ukrainian Language (GRAC, Ukrainian: Генеральний регіонально анотований корпус української мови, romanized: Heneralnyi rehionalno anotovanyi korpus ukrainskoi movy, ГРАК, Ukrainian грак for rook) is a text corpus of the Ukrainian language comprising more than 2 billion tokens, intended for linguistic research in grammar, vocabulary, and the history of the Ukrainian literary language, as well as for use in compiling dictionaries and grammars. The corpus can be used for language study and also for preparing teaching materials, textbooks, learner’s dictionaries, and exercises using examples from real texts, taking into account frequency and collocational patterns, and so on. The corpus is not a model of standard Ukrainian: it may contain words and combinations that do not match current norms of the literary language. The corpus covers the period from 1816 to 2025, and as of 29 November 2025 it contains more than 812,000 texts by about 35,000 authors. == Composition of the corpus == In the 10th version of the corpus, available for searching from 20 October 2020, 35% consists of fiction. Some fiction genres are highlighted separately: children’s literature, folklore, dramatic works, and scripts. Among non-fiction texts: journalistic writing, including newspaper collections from 1888–1893, 1905, 1913–1918, 1919–1943, modern newspapers from different regions, and texts from online news/information sites; memoirs, letters, and diaries, including a sizeable corpus of Facebook texts representing blogs by people from all regions of Ukraine and the diaspora; scholarly and educational texts: monographs, dissertations, academic articles, textbooks; large subcorpora of academic literature in history, ethnography, philosophy, and law are singled out separately; religious texts, including two Ukrainian translations of the Bible; speeches and interviews. Some dictionaries that include phrasal examples and phraseology have also been incorporated, including the Ukrainian dictionary by Borys Hrinchenko and the Russian-Ukrainian idiomatic dictionary by I. Vyrhan and M. Pylynska. Using the corpus tools, these dictionaries can be searched not only for words, but also for lexico-grammatical patterns within examples and phraseological expressions. About 20% of the texts in the corpus are translations. The corpus includes translations from more than 80 languages, most of all from English and Russian. == Dating == Texts in the corpus are dated by the year of writing, or by the latest year in which a work could have been written; translated texts are dated by the year the translation was produced. A publication year may also be indicated, corresponding to the edition from which the text is taken. == Regional annotation == The corpus’s regional annotation is based on the modern administrative division of Ukraine. The corpus includes texts from all oblasts of Ukraine and from Crimea. A single text may belong to several regional subcorpora (if the author or translator was born, studied, or lived for a long time in different regions). In addition to regional subcorpora, there are subcorpora of works by authors of the Ukrainian diaspora (USA, Canada, Poland, Germany, the United Kingdom, France, etc.). These are mostly texts by emigrants of the 1940s, and to a lesser extent of 1917–1920s. == Morphological annotation == GRAC is based on the morphological analysis system nlp_uk, developed by specialists from the r2u group. The program analyzes the text and, for each word form, determines the lemma (lexeme) and tags (grammatical features). == Research based on the corpus == Research on the Ukrainian language has been carried out using the corpus, including studies of the historical dynamics of language norms, and letter and letter-combination frequencies for font development.

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