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  • Color management

    Color management

    Color management is the process of ensuring consistent and accurate colors across various devices, such as monitors, printers, and cameras. It involves the use of color profiles, which are standardized descriptions of how colors should be displayed or reproduced. Color management is necessary because different devices have different color capabilities and characteristics. For example, a monitor may display colors differently than a printer can reproduce them. Without color management, the same image may appear differently on different devices, leading to inconsistencies and inaccuracies. To achieve color management, a color profile is created for each device involved in the color workflow. This profile describes the device's color capabilities and characteristics, such as its color gamut (range of colors it can display or reproduce) and color temperature. These profiles are then used to translate colors between devices, ensuring consistent and accurate color reproduction. Color management is particularly important in industries such as graphic design, photography, and printing, where accurate color representation is crucial. It helps to maintain color consistency throughout the entire workflow, from capturing an image to displaying or printing it. Parts of color management are implemented in the operating system (OS), helper libraries, the application, and devices. The type of color profile that is typically used is called an ICC profile. A cross-platform view of color management is the use of an ICC-compatible color management system. The International Color Consortium (ICC) is an industry consortium that has defined: an open standard for a Color Matching Module (CMM) at the OS level color profiles for: devices, including DeviceLink profiles that transform one device profile (color space) to another device profile without passing through an intermediate color space, such as LAB, more accurately preserving color working spaces, the color spaces in which color data is meant to be manipulated There are other approaches to color management besides using ICC profiles. This is partly due to history and partly because of other needs than the ICC standard covers. The film and broadcasting industries make use of some of the same concepts, but they frequently rely on more limited boutique solutions. The film industry, for instance, often uses 3D LUTs (lookup table) to represent a complete color transformation for a specific RGB encoding. At the consumer level, system wide color management is available in most of Apple's products (macOS, iOS, iPadOS, watchOS). Microsoft Windows lacks system wide color management and virtually all applications do not employ color management. Windows' media player API is not color space aware, and if applications want to color manage videos manually, they have to incur significant performance and power consumption penalties. Android supports system wide color management, but most devices ship with color management disabled. == Overview == Characterize. Every color-managed device requires a personalized table, or "color profile," which characterizes the color response of that particular device. Standardize. Each color profile describes these colors relative to a standardized set of reference colors (the "Profile Connection Space"). Translate. Color-managed software then uses these standardized profiles to translate color from one device to another. This is usually performed by a color management module (CMM). == Hardware == === Characterization === To describe the behavior of various output devices, they must be compared (measured) in relation to a standard color space. Often a step called linearization is performed first, to undo the effect of gamma correction that was done to get the most out of limited 8-bit color paths. Instruments used for measuring device colors include colorimeters and spectrophotometers. As an intermediate result, the device gamut is described in the form of scattered measurement data. The transformation of the scattered measurement data into a more regular form, usable by the application, is called profiling. Profiling is a complex process involving mathematics, intense computation, judgment, testing, and iteration. After the profiling is finished, an idealized color description of the device is created. This description is called a profile. === Calibration === Calibration is like characterization, except that it can include the adjustment of the device, as opposed to just the measurement of the device. Color management is sometimes sidestepped by calibrating devices to a common standard color space such as sRGB; when such calibration is done well enough, no color translations are needed to get all devices to handle colors consistently. This avoidance of the complexity of color management was one of the goals in the development of sRGB. == Color profiles == === Embedding === Image formats themselves (such as TIFF, JPEG, PNG, EPS, PDF, and SVG) may contain embedded color profiles but are not required to do so by the image format. The International Color Consortium standard was created to bring various developers and manufacturers together. The ICC standard permits the exchange of output device characteristics and color spaces in the form of metadata. This allows the embedding of color profiles into images as well as storing them in a database or a profile directory. === Working spaces === Working spaces, such as sRGB, Adobe RGB or ProPhoto are color spaces that facilitate good results while editing. For instance, pixels with equal values of R,G,B should appear neutral. Using a large (gamut) working space will lead to posterization, while using a small working space will lead to clipping. This trade-off is a consideration for the critical image editor. == Color transformation == Color transformation, or color space conversion, is the transformation of the representation of a color from one color space to another. This calculation is required whenever data is exchanged inside a color-managed chain and carried out by a Color Matching Module. Transforming profiled color information to different output devices is achieved by referencing the profile data into a standard color space. It makes it easier to convert colors from one device to a selected standard color space and from that to the colors of another device. By ensuring that the reference color space covers the many possible colors that humans can see, this concept allows one to exchange colors between many different color output devices. Color transformations can be represented by two profiles (source profile and target profile) or by a devicelink profile. In this process there are approximations involved which make sure that the image keeps its important color qualities and also gives an opportunity to control on how the colors are being changed. === Profile connection space === In the terminology of the International Color Consortium, a translation between two color spaces can go through a profile connection space (PCS): Color Space 1 → PCS (CIELAB or CIEXYZ) → Color space 2; conversions into and out of the PCS are each specified by a profile. === Gamut mapping === In nearly every translation process, we have to deal with the fact that the color gamut of different devices vary in range which makes an accurate reproduction impossible. They therefore need some rearrangement near the borders of the gamut. Some colors must be shifted to the inside of the gamut, as they otherwise cannot be represented on the output device and would simply be clipped. This so-called gamut mismatch occurs for example, when we translate from the RGB color space with a wider gamut into the CMYK color space with a narrower gamut range. In this example, the dark highly saturated purplish-blue color of a typical computer monitor's "blue" primary is impossible to print on paper with a typical CMYK printer. The nearest approximation within the printer's gamut will be much less saturated. Conversely, an inkjet printer's "cyan" primary, a saturated mid-brightness blue, is outside the gamut of a typical computer monitor. The color management system can utilize various methods to achieve desired results and give experienced users control of the gamut mapping behavior. ==== Rendering intent ==== When the gamut of source color space exceeds that of the destination, saturated colors are liable to become clipped (inaccurately represented), or more formally burned. The color management module can deal with this problem in several ways. The ICC specification includes four different rendering intents, listed below. Before the actual rendering intent is carried out, one can temporarily simulate the rendering by soft proofing. It is a useful tool as it predicts the outcome of the colors and is available as an application in many color management systems: Absolute colorimetric Absolute colorimetry and relative colorimetry actually use the same table but differ in the adjust

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  • Upper ontology

    Upper ontology

    In information science, an upper ontology (also known as a top-level ontology, upper model, or foundation ontology) is an ontology (in the sense used in information science) that consists of very general terms (such as "object", "property", "relation") that are common across all domains. An important function of an upper ontology is to support broad semantic interoperability among a large number of domain-specific ontologies by providing a common starting point for the formulation of definitions. Terms in the domain ontology are ranked under the terms in the upper ontology, e.g., the upper ontology classes are superclasses or supersets of all the classes in the domain ontologies. A number of upper ontologies have been proposed, each with its own proponents. Library classification systems predate upper ontology systems. Though library classifications organize and categorize knowledge using general concepts that are the same across all knowledge domains, neither system is a replacement for the other. == Development == Any standard foundational ontology is likely to be contested among different groups, each with its own idea of "what exists". One factor exacerbating the failure to arrive at a common approach has been the lack of open-source applications that would permit the testing of different ontologies in the same computational environment. The differences have thus been debated largely on theoretical grounds, or are merely the result of personal preferences. Foundational ontologies can however be compared on the basis of adoption for the purposes of supporting interoperability across domain ontologies. No particular upper ontology has yet gained widespread acceptance as a de facto standard. Different organizations have attempted to define standards for specific domains. The 'Process Specification Language' (PSL) created by the National Institute of Standards and Technology (NIST) is one example. Another important factor leading to the absence of wide adoption of any existing upper ontology is the complexity. Some upper ontologies—Cyc is often cited as an example in this regard—are very large, ranging up to thousands of elements (classes, relations), with complex interactions among them and with a complexity similar to that of a human natural language, and the learning process can be even longer than for a natural language because of the unfamiliar format and logical rules. The motivation to overcome this learning barrier is largely absent because of the paucity of publicly accessible examples of use. As a result, those building domain ontologies for local applications tend to create the simplest possible domain-specific ontology, not related to any upper ontology. Such domain ontologies may function adequately for the local purpose, but they are very time-consuming to relate accurately to other domain ontologies. To solve this problem, some genuinely top level ontologies have been developed, which are deliberately designed to have minimal overlap with any domain ontologies. Examples are Basic Formal Ontology and the DOLCE (see below). === Arguments for the infeasibility of an upper ontology === Historically, many attempts in many societies have been made to impose or define a single set of concepts as more primal, basic, foundational, authoritative, true or rational than all others. A common objection to such attempts points out that humans lack the sort of transcendent perspective — or God's eye view — that would be required to achieve this goal. Humans are bound by language or culture, and so lack the sort of objective perspective from which to observe the whole terrain of concepts and derive any one standard. Thomasson, under the headline "1.5 Skepticism about Category Systems", wrote: "category systems, at least as traditionally presented, seem to presuppose that there is a unique true answer to the question of what categories of entity there are – indeed the discovery of this answer is the goal of most such inquiries into ontological categories. [...] But actual category systems offered vary so much that even a short survey of past category systems like that above can undermine the belief that such a unique, true and complete system of categories may be found. Given such a diversity of answers to the question of what the ontological categories are, by what criteria could we possibly choose among them to determine which is uniquely correct?" Another objection is the problem of formulating definitions. Top level ontologies are designed to maximize support for interoperability across a large number of terms. Such ontologies must therefore consist of terms expressing very general concepts, but such concepts are so basic to our understanding that there is no way in which they can be defined, since the very process of definition implies that a less basic (and less well understood) concept is defined in terms of concepts that are more basic and so (ideally) more well understood. Very general concepts can often only be elucidated, for example by means of examples, or paraphrase. There is no self-evident way of dividing the world up into concepts, and certainly no non-controversial one There is no neutral ground that can serve as a means of translating between specialized (or "lower" or "application-specific") ontologies Human language itself is already an arbitrary approximation of just one among many possible conceptual maps. To draw any necessary correlation between English words and any number of intellectual concepts, that we might like to represent in our ontologies, is just asking for trouble. (WordNet, for instance, is successful and useful, precisely because it does not pretend to be a general-purpose upper ontology; rather, it is a tool for semantic / syntactic / linguistic disambiguation, which is richly embedded in the particulars and peculiarities of the English language.) Any hierarchical or topological representation of concepts must begin from some ontological, epistemological, linguistic, cultural, and ultimately pragmatic perspective. Such pragmatism does not allow for the exclusion of politics between persons or groups, indeed it requires they be considered as perhaps more basic primitives than any that are represented. Those who doubt the feasibility of general purpose ontologies are more inclined to ask "what specific purpose do we have in mind for this conceptual map of entities and what practical difference will this ontology make?" This pragmatic philosophical position surrenders all hope of devising the encoded ontology version of "The world is everything that is the case." (Wittgenstein, Tractatus Logico-Philosophicus). Finally, there are objections similar to those against artificial intelligence. Technically, the complex concept acquisition and the social / linguistic interactions of human beings suggest any axiomatic foundation of "most basic" concepts must be cognitive biological or otherwise difficult to characterize since we don't have axioms for such systems. Ethically, any general-purpose ontology could quickly become an actual tyranny by recruiting adherents into a political program designed to propagate it and its funding means, and possibly defend it by violence. Historically, inconsistent and irrational belief systems have proven capable of commanding obedience to the detriment or harm of persons both inside and outside a society that accepts them. How much more harmful would a consistent rational one be, were it to contain even one or two basic assumptions incompatible with human life? === Arguments for the feasibility of an upper ontology === Many of those who doubt the possibility of developing wide agreement on a common upper ontology fall into one of two traps: they assert that there is no possibility of universal agreement on any conceptual scheme; but they argue that a practical common ontology does not need to have universal agreement, it only needs a large enough user community (as is the case for human languages) to make it profitable for developers to use it as a means to general interoperability, and for third-party developer to develop utilities to make it easier to use; and they point out that developers of data schemes find different representations congenial for their local purposes; but they do not demonstrate that these different representations are in fact logically inconsistent. In fact, different representations of assertions about the real world (though not philosophical models), if they accurately reflect the world, must be logically consistent, even if they focus on different aspects of the same physical object or phenomenon. If any two assertions about the real world are logically inconsistent, one or both must be wrong, and that is a topic for experimental investigation, not for ontological representation. In practice, representations of the real world are created as and known to be approximations to the basic reality, and their use is circumscribed by the limits of e

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  • Informationist

    Informationist

    An informationist (or information specialist in context) provides research and knowledge management services in the context of clinical care or biomedical research. Although there is no one educational pathway or formalized set of skills or knowledge for informationists, one way to think of the informationist is as one who possesses the knowledge and skill of a medical librarian with extensive research specialization and some formal clinical or public health education that goes beyond on-the-job osmosis. Medical librarians and other biomedical professional organizations have been exploring the possibilities for evaluating how informationists are being used and whether their activities supplement or replace medical library activity. More generally, an informationist is a professional who works with information within a particular business, analytic or scientific context to drive toward outcomes based on evidence, analysis, prediction and execution. For example, an extension of the term is increasingly emerging in financial services, life sciences and health care industries. Though still nascently in use, its adoption applies to individuals with extensive industry expertise, acute familiarity with organizational structures and processes, deep domain level information mastery and information systems technical savvy. Informationists in this context support transformational initiatives within and across functional areas of an enterprise as architects, governance experts, continuous improvement advocates and strategists. == Background == The term was proposed in 2000 by Davidoff & Florance. Their editorial suggested that physicians should be delegating their information needs to informationists, just as they currently order CT scans from radiologists or cardiac catheterizations from cardiologists. They conceived of an information professional who was embedded in (and indeed, supported by) the clinical departments. Supporters of the concept see it as a means for librarians to reinvigorate connections with the faculty/clinicians, as well as provide superior service by dint of informationists' biomedical training. Critics complained that the idea is nothing new; librarians already provide in-depth, high quality information services and clinical medical librarians have been working alongside physicians, nurses and other clinicians for years. Large informationist programs in the U.S. exist at the National Institutes of Health and at Vanderbilt University. Welch Medical Library at Johns Hopkins University (JHU) is developing an informationist service model in which its 10 clinical and public health librarians are moving from serving as liaison librarians for assigned departments toward becoming embedded informationists within their departments. To prepare for the embedded informationist role, librarians are undertaking education as needed to supplement their backgrounds. For example, librarians bring experience in clinical behavior counseling, public health, nursing, and more. Informationist training can then focus upon filling gaps in research methods knowledge more so than on gaining additional knowledge in the librarian's area of expertise. Courses, seminars and workshops being undertaken include those covering systematic reviews, evidence-based medicine, critical appraisal, medical language, anatomy and physiology, biostatistics, and clinical research. The term informationist is related to that of informatician—also informaticist—and many informationists do possess skills in clinical topics, bioinformatics, and biomedical informatics. Harvard University, the University of Pittsburgh, and Washington University in St. Louis are examples of institutional libraries which have hired PhD-level scientists (who may or may not have library degrees) to provide informatics support for biomedical research.

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  • Run-time algorithm specialization

    Run-time algorithm specialization

    In computer science, run-time algorithm specialization is a methodology for creating efficient algorithms for costly computation tasks of certain kinds. The methodology originates in the field of automated theorem proving and, more specifically, in the Vampire theorem prover project. The idea is inspired by the use of partial evaluation in optimising program translation. Many core operations in theorem provers exhibit the following pattern. Suppose that we need to execute some algorithm a l g ( A , B ) {\displaystyle {\mathit {alg}}(A,B)} in a situation where a value of A {\displaystyle A} is fixed for potentially many different values of B {\displaystyle B} . In order to do this efficiently, we can try to find a specialization of a l g {\displaystyle {\mathit {alg}}} for every fixed A {\displaystyle A} , i.e., such an algorithm a l g A {\displaystyle {\mathit {alg}}_{A}} , that executing a l g A ( B ) {\displaystyle {\mathit {alg}}_{A}(B)} is equivalent to executing a l g ( A , B ) {\displaystyle {\mathit {alg}}(A,B)} . The specialized algorithm may be more efficient than the generic one, since it can exploit some particular properties of the fixed value A {\displaystyle A} . Typically, a l g A ( B ) {\displaystyle {\mathit {alg}}_{A}(B)} can avoid some operations that a l g ( A , B ) {\displaystyle {\mathit {alg}}(A,B)} would have to perform, if they are known to be redundant for this particular parameter A {\displaystyle A} . In particular, we can often identify some tests that are true or false for A {\displaystyle A} , unroll loops and recursion, etc. == Difference from partial evaluation == The key difference between run-time specialization and partial evaluation is that the values of A {\displaystyle A} on which a l g {\displaystyle {\mathit {alg}}} is specialised are not known statically, so the specialization takes place at run-time. There is also an important technical difference. Partial evaluation is applied to algorithms explicitly represented as codes in some programming language. At run-time, we do not need any concrete representation of a l g {\displaystyle {\mathit {alg}}} . We only have to imagine a l g {\displaystyle {\mathit {alg}}} when we program the specialization procedure. All we need is a concrete representation of the specialized version a l g A {\displaystyle {\mathit {alg}}_{A}} . This also means that we cannot use any universal methods for specializing algorithms, which is usually the case with partial evaluation. Instead, we have to program a specialization procedure for every particular algorithm a l g {\displaystyle {\mathit {alg}}} . An important advantage of doing so is that we can use some powerful ad hoc tricks exploiting peculiarities of a l g {\displaystyle {\mathit {alg}}} and the representation of A {\displaystyle A} and B {\displaystyle B} , which are beyond the reach of any universal specialization methods. == Specialization with compilation == The specialized algorithm has to be represented in a form that can be interpreted. In many situations, usually when a l g A ( B ) {\displaystyle {\mathit {alg}}_{A}(B)} is to be computed on many values of B {\displaystyle B} in a row, a l g A {\displaystyle {\mathit {alg}}_{A}} can be written as machine code instructions for a special abstract machine, and it is typically said that A {\displaystyle A} is compiled. The code itself can then be additionally optimized by answer-preserving transformations that rely only on the semantics of instructions of the abstract machine. The instructions of the abstract machine can usually be represented as records. One field of such a record, an instruction identifier (or instruction tag), would identify the instruction type, e.g. an integer field may be used, with particular integer values corresponding to particular instructions. Other fields may be used for storing additional parameters of the instruction, e.g. a pointer field may point to another instruction representing a label, if the semantics of the instruction require a jump. All instructions of the code can be stored in a traversable data structure such as an array, linked list, or tree. Interpretation (or execution) proceeds by fetching instructions in some order, identifying their type, and executing the actions associated with said type. In many programming languages, such as C and C++, a simple switch statement may be used to associate actions with different instruction identifiers. Modern compilers usually compile a switch statement with constant (e.g. integer) labels from a narrow range by storing the address of the statement corresponding to a value i {\displaystyle i} in the i {\displaystyle i} -th cell of a special array, as a means of efficient optimisation. This can be exploited by taking values for instruction identifiers from a small interval of values. == Data-and-algorithm specialization == There are situations when many instances of A {\displaystyle A} are intended for long-term storage and the calls of a l g ( A , B ) {\displaystyle {\mathit {alg}}(A,B)} occur with different B {\displaystyle B} in an unpredictable order. For example, we may have to check a l g ( A 1 , B 1 ) {\displaystyle {\mathit {alg}}(A_{1},B_{1})} first, then a l g ( A 2 , B 2 ) {\displaystyle {\mathit {alg}}(A_{2},B_{2})} , then a l g ( A 1 , B 3 ) {\displaystyle {\mathit {alg}}(A_{1},B_{3})} , and so on. In such circumstances, full-scale specialization with compilation may not be suitable due to excessive memory usage. However, we can sometimes find a compact specialized representation A ′ {\displaystyle A^{\prime }} for every A {\displaystyle A} , that can be stored with, or instead of, A {\displaystyle A} . We also define a variant a l g ′ {\displaystyle {\mathit {alg}}^{\prime }} that works on this representation and any call to a l g ( A , B ) {\displaystyle {\mathit {alg}}(A,B)} is replaced by a l g ′ ( A ′ , B ) {\displaystyle {\mathit {alg}}^{\prime }(A^{\prime },B)} , intended to do the same job faster.

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  • LMArena

    LMArena

    Arena (formerly LMArena and Chatbot Arena) is a public, web-based platform that evaluates large language models (LLMs). Users enter prompts for two anonymous models to respond to and vote on the model that gave the better response, after which the models' identities are revealed. Users can also choose models to test themselves via the "Direct" selection. Companies which have supplied the company with their large language models include OpenAI, Google DeepMind, and Anthropic. The website has been used for preview releases of upcoming models. Chinese company DeepSeek tested its prototype models in the Arena months before its R1 model gained attention in Western media. Other notable pre-release models include OpenAI's GPT-5 under the codename "summit" and Google DeepMind's Gemini 2.5 Flash Image (an image-generation and editing model) under the codename "Nano Banana". Research has identified specific limitations in Arena's methodology. == History == Chatbot Arena was released on April 24, 2023. In June 2024, Chatbot Arena added image support. In September 2024, Chatbot Arena moved to its own dedicated domain name, lmarena.ai (or LMArena). In April 2025, Meta released Llama 4. Llama 4 Maverick beat GPT-4o and Gemini 2.0 Flash on LMArena, but the version of Maverick on LMArena unfairly differed from the publicly available version. LMArena updated their policies in response. In April 2025, LMArena incorporated as an independent company. That May, LMArena raised $100 million in a seed funding round, valuing the company at $600 million. Participants in the seed funding round included Andreessen Horowitz, UC Investments, Lightspeed Venture Partners, Felicis Ventures, and Kleiner Perkins. On January 6, 2026, LMArena announced the closing of a $150 million Series A funding round, bringing the company’s post-money valuation to approximately $1.7 billion. The round was led by Felicis and UC Investments (University of California), with participation from Andreessen Horowitz, The House Fund, LDVP, Kleiner Perkins, Lightspeed Venture Partners, and Laude Ventures. In January 2026, LMArena added video support. On January 28, 2026, LMArena rebranded to "Arena".

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  • Artificial imagination

    Artificial imagination

    Artificial imagination is a narrow subcomponent of artificial general intelligence which generates, simulates, and facilitates real or possible fiction models to create predictions, inventions, or conscious experiences. The term artificial imagination is also used to describe a property of machines or programs. Some of the traits that researchers hope to simulate include creativity, vision, digital art, humor, and satire. Practitioners in the field are researching various aspects of Artificial imagination, such as Artificial (visual) imagination, Artificial (aural) Imagination, modeling/filtering content based on human emotions and Interactive Search. Some articles on the topic speculate on how artificial imagination may evolve to create an artificial world "people may be comfortable enough to escape from the real world". Some researchers such as G. Schleis and M. Rizki have focused on using artificial neural networks to simulate artificial imagination. Another important project is being led by Hiroharu Kato and Tatsuya Harada at the University of Tokyo in Japan. They have developed a computer capable of translating a description of an object into an image, which could be the easiest way to define what imagination is. Their idea is based on the concept of an image as a series of pixels divided into short sequences that correspond to a specific part of an image. The scientists call this sequences "visual words" and those can be interpreted by the machine using statistical distribution to read an create an image of an object the machine has not encountered. The topic of artificial imagination has garnered interest from scholars outside the computer science domain, such as noted communications scholar Ernest Bormann, who came up with the Symbolic Convergence Theory and worked on a project to develop artificial imagination in computer systems. An interdisciplinary research seminar organized by the artist Grégory Chatonsky on artificial imagination and postdigital art has taken place since 2017 at the Ecole Normale Supérieure in Paris. == Use in interactive search == The typical application of artificial imagination is for an interactive search. Interactive searching has been developed since the mid-1990s, accompanied by the World Wide Web's development and the optimization of search engines. Based on the first query and feedback from a user, the databases to be searched are reorganized to improve the searching results. Artificial imagination allows us to synthesize images and to develop a new image, whether it is in the database, regardless its existence in the real world. For example, the computer shows results that are based on the answer from the initial query. The user selects several relevant images, and then the technology analyzes these selections and reorganizes the images' ranks to fit the query. In this process, artificial imagination is used to synthesize the selected images and to improve the searching result with additional relevant synthesized images. This technique is based on several algorithms, including the Rocchio algorithm and the evolutionary algorithm. The Rocchio algorithm, locating a query point near relevant examples and far away from irrelevant examples, is simple and works well in a small system where the databases are arranged in certain ranks. The evolutionary synthesis is composed of two steps: a standard algorithm and an enhancement of the standard algorithm. Through feedback from the user, there would be additional images synthesized so as to be suited to what the user is looking for. == General artificial imagination == Artificial imagination has a more general definition and wide applications. The traditional fields of artificial imagination include visual imagination and aural imagination. More generally, all the actions to form ideas, images and concepts can be linked to imagination. Thus, artificial imagination means more than only generating graphs. For example, moral imagination is an important research subfield of artificial imagination, although classification of artificial imagination is difficult. Morals are an important part to human beings' logic, while artificial morals are important in artificial imagination and artificial intelligence. A common criticism of artificial intelligence is whether human beings should take responsibility for machines' mistakes or decisions and how to develop well-behaved machines. As nobody can give a clear description of the best moral rules, it is impossible to create machines with commonly accepted moral rules. However, recent research about artificial morals circumvent the definition of moral. Instead, machine learning methods are applied to train machines to imitate human morals. As the data about moral decisions from thousands of different people are considered, the trained moral model can reflect widely accepted rules. Memory is another major field of artificial imagination. Researchers such as Aude Oliva have performed extensive work on artificial memory, especially visual memory. Compared to visual imagination, the visual memory focuses more on how machine understand, analyse and store pictures in a human way. In addition, characters like spatial features are also considered. As this field is based on the brains' biological structures, extensive research on neuroscience has also been performed, which makes it a large intersection between biology and computer science.

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  • Sikidy

    Sikidy

    Sikidy is a form of algebraic geomancy practiced by Malagasy peoples in Madagascar. It involves algorithmic operations performed on random data generated from tree seeds, which are ritually arranged in a tableau called a toetry and divinely interpreted after being mathematically operated on. Columns of seeds, designated "slaves" or "princes" belonging to respective "lands" for each, interact symbolically to express vintana ('fate') in the interpretation of the diviner. The diviner also prescribes solutions to problems and ways to avoid fated misfortune, often involving a sacrifice. The centuries-old practice derives from Islamic influence brought to the island by medieval Arab traders. The sikidy is consulted for a range of divinatory questions pertaining to fate and the future, including identifying sources of and rectifying misfortune, reading the fate of newborns, and planning annual migrations. The mathematics of sikidy involves Boolean algebra, symbolic logic and parity. == History == The practice is several centuries old, and is influenced by Arab geomantic traditions of Arab Muslim traders on the island. Most writers link the origins of sikidy to the "sea-going trade involving the southwest coast of India, the Persian Gulf, and the east coast of Africa in the 9th or 10th century C.E." Stephen Ellis and Solofo Randrianja describe sikidy as "probably one of the oldest components of Malagasy culture", writing that it most likely the product of an indigenous divinatory art later influenced by Islamic practice. Umar H. D. Danfulani writes that the integration of Arabic divination into indigenous divination is "clearly demonstrated" in Madagascar, where the Arabic astrological system was adapted to the indigenous agricultural system and meshed with Malagasy lunar months by "adapting indigenous months, volana, to the astrological months, vintana". Danfulani also describes the concepts in sikidy of "houses" (lands) and "kings in their houses" as retained from medieval Arabic astrology. Chemillier et al. say the practice's spread across Madagascar likely originated with the southeastern Antemoro people, among whom Arab influence was the strongest. Though the etymology of sikidy is unknown, it has been posited that the word derives from the Arabic sichr ('incantation' or 'charm'). Sikidy was of central importance to pre-Christian Malagasy religion, with one practitioner quoted in 1892 as calling sikidy "the Bible of our ancestors". A missionary report from 1616 describes one form of sikidy using tamarind seeds, and another using fingered markings in the sand. The early colonial French governor of Madagascar Étienne de Flacourt documented sikidy in the mid-17th century: Matatane country in southeastern Madagascar [...] where the Antemoro [...] live was a center of astrological study as early as the fourteenth century [...]. This area was also the site of early Arab settlements, although strict Islamic observances were lost centuries ago [...]. Historical evidence shows that Antemoro diviners, bearers of the astrological system, infiltrated nearly all the ancient kingdoms of Madagascar beginning in the sixteenth century. [...] Today, although many persons claim to be ombiasy [diviners], only the Antemoro diviners are considered true professionals. The area is still a famous place of learning where specialists go for training and then return to their home communities with a certain body of knowledge. Now we can better understand the degree of similarity of divination forms found throughout Madagascar. For centuries Matitanana has remained a training center for diviners who have migrated widely, usually attaining important positions in their home communities and with various royal families. Comparison of contemporary rites with centuries-old texts show that sikidy has been remarkably unchanged throughout its history. The "infiltration" of Malagasy kingdoms by Antemoro diviners, and Matitanana's role as a place for astrological and divinatory learning, help to explain the relatively uniform practicing of sikidy across Madagascar. Chemallier et al. write that the mathematical construction of the arrangement of seeds is procedurally consistent across all of Madagascar, with variations in practice between groups and regions being limited to more minor aspects, such as the alignment of figures according to cardinal directions. One exception is the simplified Merina sikidy joria. === Origin myths === Mythic tradition relating to the origin of sikidy "links [the practice] both to the return by walking on water of Arab ancestors who had intermarried with Malagasy but then left, and to the names of the days of the week" and holds that the art was supernaturally communicated to the ancestors, with Zanahary (the supreme deity of Malagasy religion) giving it to Ranakandriana, who then gave it to a line of diviners (Ranakandriana to Ramanitralanana to Rabibi-andrano to Andriambavi-maitso (who was a woman) to Andriam-bavi-nosy), the last of whom terminated the monopoly by giving it to the people, declaring: "Behold, I give you the sikidy, of which you may inquire what offerings you should present in order to obtain blessings; and what expiation you should make so as to avert evils, when any are ill or under apprehension of some future calamity". A mythic anecdote of Ranakandriana says that two men observed him one day playing in the sand. In fact he was practicing a form of sikidy worked in sand called sikidy alanana. The two men seized him, and Ranakandriana promised that he would teach them something if they released him. They agreed, and Ranakandriana taught them in depth how to work the sikidy. The two men then went to their chief and told him that they could tell him "the past and the future—what was good and what was bad—what increased and what diminished." The chief asked them to tell him how he could obtain plenty of cattle. The two men worked their sikidy and told the chief to kill all of his bulls, and that "great numbers would come to him" on the following Friday. The chieftain, doubting, asked what would happen if their prediction didn't come true, and the two men promised they would pay with their lives. The chief agreed and killed his bulls. On Thursday, thinking he'd been duped, he prematurely killed the first man of the two who'd told him about the divinatory art. On Friday, however, "vast herds" came amidst heavy rain, actually filling an immense plain in their crowd. The chieftain lamented the mpisikidy's wrongful execution and ordered for him a pompous funeral. The chieftain took the second man as his close adviser and friend, and trusted the sikidy forever afterwards. The British missionary William Ellis recorded in 1839 two idiomatic expressions used in Madagascar that come from this story: "Tsy mahandry andro Zoma" (lit. 'He cannot wait 'til Friday') is said of someone extremely impatient, and heavy rainshowers falling in rapid succession are called "sese omby" (lit. 'a crowding together of cattle'). == Rites and arrangement of seeds == The divination is performed by a practitioner called an mpisikidy, ny màsina (lit. 'sacred one'), ombiasy, or ambiàsa (derived from the Arabic anbia, meaning 'prophet') who guides the client through the process and interprets the results in the context of the client's inquiries and desires. As part of an mpisikidy's formal initiation into the art, which includes a long period of apprenticeship, the initiate (called a mianatsy) must gather 124 and 200 fàno (Entada sp.) or kily (tamarind) tree seeds for his subsequent ritual use in sikidy. Raymond Decary writes that, at least among the Sakalava, a man must be 40 years old before learning and practicing sikidy, or he risks death. Before beginning to study, a student practitioner must make incisions at the tips of his index finger, his middle finger, and his tongue, and put within the incisions a paste containing red pepper and crushed wasp. This paste impregnates the fingers that will move the seeds of the sikidy and the tongue that will speak their revelations with the power to decipher the sikidy. Once this is done, he leaves at dawn to search for a fano (Entada chrysostachys) tree. Upon finding it, he throws his spear at its branches, shaking the tree and causing its large seed pods to fall. During this act, some initiates say: "When you were on the steep peak and in the dense forest, on you the crabs climbed, from you the crocodiles made their bed, with their paws the birds trod on you. Whether you are suspended in the trees or buried, you are never dried up nor rotten." In his study (written in 1941 and revised in 1948), Decary reported that the salary paid by a mianatsy to his master is "not very high": up to five francs, plus a red rooster's feather. The mpisikidy ritually arranges his seeds into a sixteen-column table consisting of four columns of randomly-generated data (representing fate) and eight columns of data derived from logical ope

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  • PureXML

    PureXML

    pureXML is the native XML storage feature in the IBM Db2 data server. pureXML provides query languages, storage technologies, indexing technologies, and other features to support XML data. The word pure in pureXML was chosen to indicate that Db2 natively stores and natively processes XML data in its inherent hierarchical structure, as opposed to treating XML data as plain text or converting it into a relational format. == Technical information == Db2 includes two distinct storage mechanisms: one for efficiently managing traditional SQL data types, and another for managing XML data. The underlying storage mechanism is transparent to users and applications; they simply use SQL (including SQL with XML extensions or SQL/XML) or XQuery to work with the data. XML data is stored in columns of Db2 tables that have the XML data type. XML data is stored in a parsed format that reflects the hierarchical nature of the original XML data. As such, pureXML uses trees and nodes as its model for storing and processing XML data. If you instruct Db2 to validate XML data against an XML schema prior to storage, Db2 annotates all nodes in the XML hierarchy with information about the schema types; otherwise, it will annotate the nodes with default type information. Upon storage, Db2 preserves the internal structure of XML data, converting its tag names and other information into integer values. Doing so helps conserve disk space and also improves the performance of queries that use navigational expressions. However, users aren't aware of this internal representation. Finally, Db2 automatically splits XML nodes across multiple database pages, as needed. XML schemas specify which XML elements are valid, in what order these elements should appear in XML data, which XML data types are associated with each element, and so on. pureXML allows you to validate the cells in a column of XML data against no schema, one schema, or multiple schemas. pureXML also provides tools to support evolving XML schemas. IBM has enhanced its programming language interfaces to support access to its XML data. These enhancements span Java (JDBC), C (embedded SQL and call-level interface), COBOL (embedded SQL), PHP, and Microsoft's .NET Framework (through the DB2.NET provider). == History == pureXML was first included in the DB2 9 for Linux, Unix, and Microsoft Windows release, which was codenamed Viper, in June 2006. It was available on DB2 9 for z/OS in March 2007. In October 2007, IBM released DB2 9.5 with improved XML data transaction performance and improved storage savings. In June 2009, IBM released DB2 9.7 with XML supported for database-partitioned, range-partitioned, and multi-dimensionally clustered tables as well as compression of XML data and indices. == Competition == Db2 is a hybrid data server—it offers data management for traditional relational data, as well as providing native XML data management. Other vendors that offer data management for both relational data and native XML storage include Oracle with its 11g product and Microsoft with its SQL Server product. pureXML also competes with native XML databases like BaseX, eXist, MarkLogic or Sedna. == Books == IBM International Technical Support Organization (ITSO) has published the following books, which are available in print or as free e-books: DB2 9: pureXML Overview and Fast Start DB2 9 pureXML Guide The following books are also available for purchase: DB2 pureXML Cookbook: Master the Power of IBM Hybrid Data Server == Education and training == The following pureXML classroom and online courses are available from IBM Education: Query and Manage XML Data with DB2 9. IBM course CG130. Classroom. Duration: 4 days. Query XML Data with DB2 9. IBM course CG100. Classroom. Duration: 2 days (first 2 days of CG130). Managing XML Data in DB2 9. IBM course CG160. Classroom. Duration: 2 days (last 2 days of CG130). DB2 pureXML. IBM Course CT140. Self-paced study plus Live Virtual Classroom.

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  • Summify

    Summify

    Summify was a social news aggregator founded by Mircea Paşoi and Cristian Strat, two former Google and Microsoft interns from Romania. The service emailed its users a periodic summary of news articles shared from their social networks based on their relevance and importance. The platform supported Twitter, Facebook, and Google Reader accounts. == History == In 2009, Paşoi and Strat created ReadFu, a plugin that provided a contextual summary and statistics of the target page of a hyperlink. In January 2010, ReadFu was accepted into the Vancouver-based start-up incubator Bootup Labs. On March 20, 2010 the service was renamed to Summify and a private beta began. On August 11, 2010 Paşoi and Strat announced a new direction for the service. It would become a real-time social news reader that aggregates incoming news from social networks and displays articles by importance using social reactions. After some feedback that the users preferred article digests by email more than the real-time news reader version, Summify discontinued the news reader version. In March 2011, Summify completed a Seed round, with investors including Rob Glaser, Accel Partners, and Stewart Butterfield. Summify received coverage from various news and media outlets such as TechCrunch. It was also featured in various news platforms, such as Time, The Globe and Mail, Mashable, VentureBeat, Gizmodo, Lifehacker, and The Next Web. Summify released a free app on the Apple App Store on July 8, 2011. The app allowed users to read their web summaries from iOS mobile devices. Summify was acquired by Twitter on January 19, 2012. The service shut down soon after, on June 22, 2012.

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  • Savepoint

    Savepoint

    A savepoint is a way of implementing subtransactions (also known as nested transactions) within a relational database management system by indicating a point within a transaction that can be "rolled back to" without affecting any work done in the transaction before the savepoint was created. Multiple savepoints can exist within a single transaction. Savepoints are useful for implementing complex error recovery in database applications. If an error occurs in the midst of a multiple-statement transaction, the application may be able to recover from the error (by rolling back to a savepoint) without needing to abort the entire transaction. A savepoint can be declared by issuing a SAVEPOINT name statement. All changes made after a savepoint has been declared can be undone by issuing a ROLLBACK TO SAVEPOINT name command. Issuing RELEASE SAVEPOINT name will cause the named savepoint to be discarded, but will not otherwise affect anything. Issuing the commands ROLLBACK or COMMIT will also discard any savepoints created since the start of the main transaction. Savepoints are defined in the SQL standard and are supported by all established SQL relational databases, including PostgreSQL, Oracle Database, Microsoft SQL Server, MySQL, IBM Db2, SQLite (since 3.6.8), Firebird, H2 Database Engine, and Informix (since version 11.50xC3).

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  • List of library and information science journals

    List of library and information science journals

    This list covers the journals, magazines, periodicals already published and continuing in the discipline of library and information science (LIS). It doesn't include ceased titles or predatory journals. Titles listed were taken from various scholarly sources, UGC Care and Wikipedia articles. == LIS journal prestige as assessed by LIS faculty == In a 2013 article by Laura Manzari, 232 LIS faculty members from ALA-accredited information science programs ranked the most prestigious journals in library and information science. The following journals were ranked in the top ten most prestigious: Journal of the Association for Information Science and Technology The Library Quarterly Annual Review of Information Science and Technology Journal of Documentation Library Trends Library and Information Science Research Information Processing and Management Journal of Education for Library and Information Science Education College & Research Libraries First Monday (journal) A subsequent study by Safón and Docampo in 2023 identified impactful LIS journals based on their influence on papers published in other LIS publications. Journals listed in the top ten in this study that did not appear in Manzari's list include: Scientometrics International Journal of Information Management Quantitative Science Studies MIS Quarterly Information and Management Journal of the Association for Information Systems Journal of Informetrics The Journal of Academic Librarianship == India == Annals of Library and Information Studies. (Pub: CSIR-NIScPR ), Formerly: Annals of Library Science. ISSN 0003-4835. (1954-) OPEN ACCESS Collnet Journal of Scientrometrics and Information Management (Pub: Taru Publications, Online through Taylor and Francis) ISSN: 0973-7766 Online 2168-930X. College Libraries (Pub: West Bengal College Librarians’ Association (WBCLA) ISSN 0972-1975, Quarterly DESIDOC Journal of Library and Information Technology (DJLIT) (Formerly: DESIDOC Bulletin 0970-8154, DESIDOC Bulletin of Information Technology. 0971-4383/0974-0643) (Pub: Defence Scientific Information & Documentation Centre) ISSN: 0974-0643, ISSN: 0976-4658 (O), Bi-monthly, OPEN ACCESS. Grandhalaya Sarvaswam (Bilingual: Telugu & English) [Pub: Andhra Pradesh Library Association, Vijayawada, Andhra Pradesh, India] (1915–) Gyankosh: Journal of Library and Information Management. (Pub: Integrated Academy Of Management And Technology. Through: Indian Journals.Com). ISSN: 2229-4023 (P), 2249-3182. Half yearly. IASLIC Bulletin (Pub: Indian Association of Special Libraries and Information Centres) ISSN: 0018-8411. Quarterly (1956-) IASLIC Newsletter (Pub: Indian Association of Special Libraries and Information Centres. (Pub: Indian Association of Special Libraries and Information Centres) ISSN 0018-845X. Monthly. (1966-) INFLIBNET Newsletter. (Pub: INFLIBNET). Monthly. Informatics Studies. (Pub: Centre For Informatics Research And Development). Quarterly. Through: Indian journals.com. ISSN: 2583-8994 (Online), 2320-530X (Print) ISST Journal of Advances in Librarianship (Pub:Intellectuals Society for Socio-Techno Welfare) ISSN: 0976-9021. Semiannual. Journal of Advanced Research in Library and Information Science. (JALIS Publishers). 4/year. ISSN 2277-2219. Journal of Indian Library Association (Pub: Indian Library Association). ISSN (P) 2277-5145 O) 2456-513X. Quarterly. (1965-). Journal of Scientometric Research. (Pub: Phcog.Net). ISSN (P) 2321-6654, (O) 2320-0057]; Frequency : Triannual. KELPRO Bulletin (Pub: Kerala Library Professionals' Organisation - KELPRO). ISSN 0975-4911( Print),2582-497X (O).(1993-) KIIT Journal of Library and Information Management (Pub: KIIT University, online through Indian Journals.com) Half yearly. ISSN: 2348-0858. Library Herald. (Pub: Delhi Library Association - DLA). Quarterly. ISSN: 0024-2292. Library Progress (International). (Pub: Bpas Publications, Through: ). Half yearly. ISSN: 0970-1052. (O) ISSN: 2320-317X. (1981-) Pearl: A Journal of Library and Information Science. (Pub: University Library Teacher's Association of Andhra Pradesh, Hyderabad), ISSN: 0973-7081 (print), 0975-6922 (online). Quarterly. RBU Journal of Library and Information Science. (Pub: Rabindra Bharati University).ISSN: 0972-2750. Annual. SALIS Journal of Information Management and Technology - SJIMT. (Pub: Society for the Advancement of Library and Information Science). Half-yearly. ISSN 0975-4105. SALIS Journal of Library and Information Science - SJLIS: an International Journal. (Pub: Society for the Advancement of Library and Information Science). Half-yearly. ISSN: 0973-3108. SRELS journal of Information and Knowledge (Formerly: Library Science with a Slant to Documentation, ISSN: 0024-2543; Library Science with a Slant to Documentation and Information Studies ISSN: 0970-6089; SRELS Journal of Information Management ISSN: ). Quarterly. ISSN: 2583-9314 (O) World Digital Libraries. Half yearly. ISSN: 0974-567X (P), 0975-7597 (O). == Other countries == African Journal of Library, Archives and Information Science Art Libraries Journal (Cambridge University Press) Bibliothèque de l'École des Chartes Canadian Journal of Information and Library Science Cataloging & Classification Quarterly Communications in Information Literacy Cataloging & Classification Quarterly Catholic Library Association Children and Libraries Code4Lib Journal College & Research Libraries Communications in Information Literacy Disability in Library and Information Studies Electronic Journal of Academic and Special Librarianship El Profesional de la Información (es) (EPI) (Formerly Information World en Español) Evidence Based Library and Information Practice (journal) Faslname-ye Ketab Florida Libraries. Florida Library Association. Georgia Library Quarterly. Quarterly. (Pub: Georgia Library Association). Hipertext.net IFLA Journal In the Library with the Lead Pipe Information & Culture International Journal of Information Retrieval Research (IJIRR) Information Processing and Management Information Research Information Sciences (journal) Information Visualization (journal) Information, Communication & Society International Journal of Geographical Information Science Information Research: An International Electronic Journal (IR) Internet Research (journal) Issues in Science and Technology Librarianship Italian Journal of Library and Information Studies (JLIS.it) JLIS.it Journal of Documentation (JDoc) Journal of Information Ethics Journal of Information Science (JIS) Journal of Information Technology Journal of Informetrics Journal of Librarianship and Information Science Journal of Library & Information Studies - JLIS. (Pub: National Taiwan University) Journal of Library Administration Journal of Religious & Theological Information Journal of the Association for Information Science and Technology (Formerly Journal of the American Society for Information Science and Technology) (JASIST) Journal of the Medical Library Association Journal of the Canadian Health Libraries Association (Pub: Canadian Health Libraries Association). Knowledge Organization (journal) Knowledge Quest. (Pub: American Association of School Librarians) Library and Information Science Abstracts Library Literature and Information Science Library, Information Science & Technology Abstracts Library Literature and Information Science Retrospective Library Review (journal) Library Trends Libri (journal) Malaysian Journal of Library and Information Science MLA Forum New Century Library New Review of Children's Literature and Librarianship Notes (journal) Portal – Libraries and the Academy Progressive Librarian, Progressive Librarians Guild Reference and User Services Quarterly Reference Services Review Research Evaluation (journal) Scientometrics (journal) Serials Review South African Journal of Libraries and Information Science The Charleston Advisor The Christian Librarian, from the Association of Christian Librarians The Journal of Academic Librarianship The Library Quarterly (LQ) The Public-Access Computer Systems Review TripleC Webolog

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  • Data management plan

    Data management plan

    A data management plan or DMP is a formal document that outlines how data are to be handled both during a research project, and after the project is completed. The goal of a data management plan is to consider the many aspects of data management, metadata generation, data preservation, and analysis before the project begins; this may lead to data being well-managed in the present, and prepared for preservation in the future. DMPs were originally used in 1966 to manage aeronautical and engineering projects' data collection and analysis, and expanded across engineering and scientific disciplines in the 1970s and 1980s. Up until the early 2000s, DMPs were used "for projects of great technical complexity, and for limited mid-study data collection and processing purposes". In the 2000s and later, E-research and economic policies drove the development and uptake of DMPs. == Importance == Preparing a data management plan before data are collected is claimed to ensure that data are in the correct format, organized well, and better annotated. This could arguably save time in the long term because there is no need to re-organize, re-format, or try to remember details about data. It is also claimed to increase research efficiency since both the data collector and other researchers might be able to understand and use well-annotated data in the future. One component of a data management plan is data archiving and preservation. By deciding on an archive ahead of time, the data collector can format data during collection to make its future submission to a database easier. If data are preserved, they are more relevant since they can be re-used by other researchers. It also allows the data collector to direct requests for data to the database, rather than address requests individually. A frequent argument in favor of preservation is that data that are preserved have the potential to lead to new, unanticipated discoveries, and they prevent duplication of scientific studies that have already been conducted. Data archiving also provides insurance against loss by the data collector. In the 2010s, funding agencies increasingly required data management plans as part of the proposal and evaluation process, despite little or no evidence of their efficacy. == Major components == "There is no general and definitive list of topics that should be covered in a DMP for a research project", and researchers are often left to their own devices as to how to fill out a DMP. === Information about data and data format === A description of data to be produced by the project. This might include (but is not limited to) data that are: Experimental Observational Raw or derived Physical collections Models Simulations Curriculum materials Software Images How will the data be acquired? When and where will they be acquired? After collection, how will the data be processed? Include information about Software used Algorithms Scientific workflows File formats that will be used, justify those formats, and describe the naming conventions used. Quality assurance & quality control measures that will be taken during sample collection, analysis, and processing. If existing data are used, what are their origins? How will the data collected be combined with existing data? What is the relationship between the data collected and existing data? How will the data be managed in the short-term? Consider the following: Version control for files Backing up data and data products Security & protection of data and data products Who will be responsible for management === Metadata content and format === Metadata are the contextual details, including any information important for using data. This may include descriptions of temporal and spatial details, instruments, parameters, units, files, etc. Metadata is commonly referred to as "data about data". Issues to be considered include: How detailed has the metadata to be in order to make the data meaningful? How will the metadata be created and/or captured? Examples include lab notebooks, GPS hand-held units, Auto-saved files on instruments, etc. What format will be used for the metadata? What are the metadata standards commonly used in the respective scientific discipline? There should be justification for the format chosen. === Policies for access, sharing, and re-use === Describe any obligations that exist for sharing data collected. These may include obligations from funding agencies, institutions, other professional organizations, and legal requirements. Include information about how data will be shared, including when the data will be accessible, how long the data will be available, how access can be gained, and any rights that the data collector reserves for using data. Address any ethical or privacy issues with data sharing Address intellectual property & copyright issues. Who owns the copyright? What are the institutional, publisher, and/or funding agency policies associated with intellectual property? Are there embargoes for political, commercial, or patent reasons? Describe the intended future uses/users for the data Indicate how the data should be cited by others. How will the issue of persistent citation be addressed? For example, if the data will be deposited in a public archive, will the dataset have a persistent identifier (e.g., ARK, DOI, Handle, PURL, URN) assigned to it? === Long-term storage and data management === Researchers should identify an appropriate archive for the long-term preservation of their data. By identifying the archive early in the project, the data can be formatted, transformed, and documented appropriately to meet the requirements of the archive. Researchers should consult colleagues and professional societies in their discipline to determine the most appropriate database, and include a backup archive in their data management plan in case their first choice goes out of existence. Early in the project, the primary researcher should identify what data will be preserved in an archive. Usually, preserving the data in its most raw form is desirable, although data derivatives and products can also be preserved. An individual should be identified as the primary contact person for archived data, and ensure contact information is always kept up-to-date in case there are requests for data or information about data. === Budget === Data management and preservation costs may be considerable, depending on the nature of the project. By anticipating costs ahead of time, researchers ensure that the data will be properly managed and archived. Potential expenses that should be considered are Human resources and staff as they handle data preparation, management, documentation, and preservation Hardware and/or software needed for data management, backing up, security, documentation, and preservation Costs associated with submitting the data to an archive The data management plan should include how these costs will be paid. == NSF Data Management Plan == All grant proposals submitted to National Science Foundation (NSF) must include a Data Management Plan that is no more than two pages. This is a supplement (not part of the 15-page proposal) and should describe how the proposal will conform to the Award and Administration Guide policy (see below). It may include the following: The types of data The standards to be used for data and metadata format and content Policies for access and sharing Policies and provisions for re-use Plans for archiving data Policy summarized from the NSF Award and Administration Guide, Section 4 (Dissemination and Sharing of Research Results): Promptly publish with appropriate authorship Share data, samples, physical collections, and supporting materials with others, within a reasonable time frame Share software and inventions Investigators can keep their legal rights over their intellectual property, but they still have to make their results, data, and collections available to others Policies will be implemented via Proposal review Award negotiations and conditions Support/incentives == ESRC Data Management Plan == Since 1995, the UK's Economic and Social Research Council (ESRC) have had a research data policy in place. The current ESRC Research Data Policy states that research data created as a result of ESRC-funded research should be openly available to the scientific community to the maximum extent possible, through long-term preservation and high-quality data management. ESRC requires a data management plan for all research award applications where new data are being created. Such plans are designed to promote a structured approach to data management throughout the data lifecycle, resulting in better quality data that is ready to archive for sharing and re-use. The UK Data Service, the ESRC's flagship data service, provides practical guidance on research data management planning suitable for social science researchers in the UK and around the world. ESRC has a longstanding arrangement with the UK Data A

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  • Creately

    Creately

    Creately is a SaaS visual collaboration tool with diagramming and design capabilities designed by Cinergix. The application is mostly known for creating flowcharts, organization charts, project charts, UML diagrams, mind maps, and other business visuals. == History == The initial beta version of Creately was released by Chandika Jayasundara. Hiraash Thawfeek, Nick Foster and Charanjit Singh joined the project in the same year. Chandika Jayasundara is CEO of Cinergix. The headquarters of the company is located at Mentone, Victoria, Australia. == Features and reception == Creately provides predefined templates and diagram elements for incorporating in the projects. It provides drag and drop feature with which both predefined and custom made shapes can be included to build the desired diagram while the same workspace can be shared with multiple persons for collaboration. Some experts have reviewed the application by commenting on its lacking in accessible integration options as its downside. The company claims Creately to have integration feature with Slack, Confluence while not having the integration with Zapier and OneDrive yet. It is compatible with Google Drive and Dropbox. The software is available as both freemium and paid option.

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  • Broadcast (parallel pattern)

    Broadcast (parallel pattern)

    Broadcast is a collective communication primitive in parallel programming to distribute programming instructions or data to nodes in a cluster. It is the reverse operation of reduction. The broadcast operation is widely used in parallel algorithms, such as matrix-vector multiplication, Gaussian elimination and shortest paths. The Message Passing Interface implements broadcast in MPI_Bcast. == Definition == A message M [ 1.. m ] {\displaystyle M[1..m]} of length m {\displaystyle m} should be distributed from one node to all other p − 1 {\displaystyle p-1} nodes. T byte {\displaystyle T_{\text{byte}}} is the time it takes to send one byte. T start {\displaystyle T_{\text{start}}} is the time it takes for a message to travel to another node, independent of its length. Therefore, the time to send a package from one node to another is t = s i z e × T byte + T start {\displaystyle t=\mathrm {size} \times T_{\text{byte}}+T_{\text{start}}} . p {\displaystyle p} is the number of nodes and the number of processors. == Binomial Tree Broadcast == With Binomial Tree Broadcast the whole message is sent at once. Each node that has already received the message sends it on further. This grows exponentially as each time step the amount of sending nodes is doubled. The algorithm is ideal for short messages but falls short with longer ones as during the time when the first transfer happens only one node is busy. Sending a message to all nodes takes log 2 ⁡ ( p ) t {\displaystyle \log _{2}(p)t} time which results in a runtime of log 2 ⁡ ( p ) ( m T byte + T start ) {\displaystyle \log _{2}(p)(mT_{\text{byte}}+T_{\text{start}})} == Linear Pipeline Broadcast == The message is split up into k {\displaystyle k} packages and sent piecewise from node n {\displaystyle n} to node n + 1 {\displaystyle n+1} . The time needed to distribute the first message piece is p t = m k T byte + T start {\textstyle pt={\frac {m}{k}}T_{\text{byte}}+T_{\text{start}}} whereby t {\displaystyle t} is the time needed to send a package from one processor to another. Sending a whole message takes ( p + k ) ( m T byte k + T start ) = ( p + k ) t = p t + k t {\displaystyle (p+k)\left({\frac {mT_{\text{byte}}}{k}}+T_{\text{start}}\right)=(p+k)t=pt+kt} . Optimal is to choose k = m ( p − 2 ) T byte T start {\displaystyle k={\sqrt {\frac {m(p-2)T_{\text{byte}}}{T_{\text{start}}}}}} resulting in a runtime of approximately m T byte + p T start + m p T start T byte {\displaystyle mT_{\text{byte}}+pT_{\text{start}}+{\sqrt {mpT_{\text{start}}T_{\text{byte}}}}} The run time is dependent on not only message length but also the number of processors that play roles. This approach shines when the length of the message is much larger than the amount of processors. == Pipelined Binary Tree Broadcast == This algorithm combines Binomial Tree Broadcast and Linear Pipeline Broadcast, which makes the algorithm work well for both short and long messages. The aim is to have as many nodes work as possible while maintaining the ability to send short messages quickly. A good approach is to use Fibonacci trees for splitting up the tree, which are a good choice as a message cannot be sent to both children at the same time. This results in a binary tree structure. We will assume in the following that communication is full-duplex. The Fibonacci tree structure has a depth of about d ≈ log Φ ⁡ ( p ) {\displaystyle d\approx \log _{\Phi }(p)} whereby Φ = 1 + 5 2 {\displaystyle \Phi ={\frac {1+{\sqrt {5}}}{2}}} the golden ratio. The resulting runtime is ( m k T byte + T start ) ( d + 2 k − 2 ) {\textstyle ({\frac {m}{k}}T_{\text{byte}}+T_{\text{start}})(d+2k-2)} . Optimal is k = n ( d − 2 ) T byte 3 T start {\displaystyle k={\sqrt {\frac {n(d-2)T_{\text{byte}}}{3T_{\text{start}}}}}} . This results in a runtime of 2 m T byte + T start log Φ ⁡ ( p ) + 2 m log Φ ⁡ ( p ) T start T byte {\displaystyle 2mT_{\text{byte}}+T_{\text{start}}\log _{\Phi }(p)+{\sqrt {2m\log _{\Phi }(p)T_{\text{start}}T_{\text{byte}}}}} . == Two Tree Broadcast (23-Broadcast) == === Definition === This algorithm aims to improve on some disadvantages of tree structure models with pipelines. Normally in tree structure models with pipelines (see above methods), leaves receive just their data and cannot contribute to send and spread data. The algorithm concurrently uses two binary trees to communicate over. Those trees will be called tree A and B. Structurally in binary trees there are relatively more leave nodes than inner nodes. Basic Idea of this algorithm is to make a leaf node of tree A be an inner node of tree B. It has also the same technical function in opposite side from B to A tree. This means, two packets are sent and received by inner nodes and leaves in different steps. === Tree construction === The number of steps needed to construct two parallel-working binary trees is dependent on the amount of processors. Like with other structures one processor can is the root node who sends messages to two trees. It is not necessary to set a root node, because it is not hard to recognize that the direction of sending messages in binary tree is normally top to bottom. There is no limitation on the number of processors to build two binary trees. Let the height of the combined tree be h = ⌈log(p + 2)⌉. Tree A and B can have a height of h − 1 {\displaystyle h-1} . Especially, if the number of processors correspond to p = 2 h − 1 {\displaystyle p=2^{h}-1} , we can make both sides trees and a root node. To construct this model efficiently and easily with a fully built tree, we can use two methods called "Shifting" and "Mirroring" to get second tree. Let assume tree A is already modeled and tree B is supposed to be constructed based on tree A. We assume that we have p {\displaystyle p} processors ordered from 0 to p − 1 {\displaystyle p-1} . ==== Shifting ==== The "Shifting" method, first copies tree A and moves every node one position to the left to get tree B. The node, which will be located on -1, becomes a child of processor p − 2 {\displaystyle p-2} . ==== Mirroring ==== "Mirroring" is ideal for an even number of processors. With this method tree B can be more easily constructed by tree A, because there are no structural transformations in order to create the new tree. In addition, a symmetric process makes this approach simple. This method can also handle an odd number of processors, in this case, we can set processor p − 1 {\displaystyle p-1} as root node for both trees. For the remaining processors "Mirroring" can be used. === Coloring === We need to find a schedule in order to make sure that no processor has to send or receive two messages from two trees in a step. The edge, is a communication connection to connect two nodes, and can be labelled as either 0 or 1 to make sure that every processor can alternate between 0 and 1-labelled edges. The edges of A and B can be colored with two colors (0 and 1) such that no processor is connected to its parent nodes in A and B using edges of the same color- no processor is connected to its children nodes in A or B using edges of the same color. In every even step the edges with 0 are activated and edges with 1 are activated in every odd step. === Time complexity === In this case the number of packet k is divided in half for each tree. Both trees are working together the total number of packets k = k / 2 + k / 2 {\displaystyle k=k/2+k/2} (upper tree + bottom tree) In each binary tree sending a message to another nodes takes 2 i {\displaystyle 2i} steps until a processor has at least a packet in step i {\displaystyle i} . Therefore, we can calculate all steps as d := log 2 ⁡ ( p + 1 ) ⇒ log 2 ⁡ ( p + 1 ) ≈ log 2 ⁡ ( p ) {\displaystyle d:=\log _{2}(p+1)\Rightarrow \log _{2}(p+1)\approx \log _{2}(p)} . The resulting run time is T ( m , p , k ) ≈ ( m k T byte + T start ) ( 2 d + k − 1 ) {\textstyle T(m,p,k)\approx ({\frac {m}{k}}T_{\text{byte}}+T_{\text{start}})(2d+k-1)} . (Optimal k = m ( 2 d − 1 ) T byte / T start {\textstyle k={\sqrt {{m(2d-1)T_{\text{byte}}}/{T_{\text{start}}}}}} ) This results in a run time of T ( m , p ) ≈ m T byte + T start ⋅ 2 log 2 ⁡ ( p ) + m ⋅ 2 log 2 ⁡ ( p ) T start T byte {\displaystyle T(m,p)\approx mT_{\text{byte}}+T_{\text{start}}\cdot 2\log _{2}(p)+{\sqrt {m\cdot 2\log _{2}(p)T_{\text{start}}T_{\text{byte}}}}} . == ESBT-Broadcasting (Edge-disjoint Spanning Binomial Trees) == In this section, another broadcasting algorithm with an underlying telephone communication model will be introduced. A Hypercube creates network system with p = 2 d ( d = 0 , 1 , 2 , 3 , . . . ) {\displaystyle p=2^{d}(d=0,1,2,3,...)} . Every node is represented by binary 0 , 1 {\displaystyle {0,1}} depending on the number of dimensions. Fundamentally ESBT(Edge-disjoint Spanning Binomial Trees) is based on hypercube graphs, pipelining( m {\displaystyle m} messages are divided by k {\displaystyle k} packets) and binomial trees. The Processor 0 d {\displaystyle 0^{d}} cyclically spreads packets to roots of ESB

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  • Cancer Likelihood in Plasma

    Cancer Likelihood in Plasma

    Cancer Likelihood in Plasma (CLiP) refers to a set of ensemble learning methods for integrating various genomic features useful for the noninvasive detection of early cancers from blood plasma. An application of this technique for early detection of lung cancer (Lung-CLiP) was originally described by Chabon et al. (2020) from the labs of Ash Alizadeh and Max Diehn at Stanford. This method relies on several improvements to cancer personalized profiling by deep sequencing (CAPP-Seq) for analysis of circulating tumor DNA (ctDNA). The CLiP technique integrates multiple distinctive genomic features of a cancer of interest findings within a machine-learning framework for cancer detection. For example, studies have shown that the majority of somatic mutations found in cell-free DNA (cfDNA) are not tumor derived, but instead reflect clonal hematopoeisis (also known as CHIP). Even though CHIP tends to target specific genes, it also involves many generally non-recurrent mutations that can be shed from leukocytes and detected in cfDNA, regardless of whether profiling patients with cancer and healthy adults. However, genuine tumor derived ctDNA mutations can be distinguished from CHIP-derived mutations. This is because unlike tumor-derived mutations, CHIP-derived mutations that are shed from leukocytes into plasma tend to occur on longer cfDNA fragments, and to lack specific mutational signatures such as those associated with tobacco smoking in lung cancer that are also found in tumor derived ctDNA molecules. CLiP integrates these features within hierarchical ensemble machine learning models that consider somatic mutations and copy number alternations, among other features. While the CLiP method is unique in relying exclusively on mutations and copy number alterations, it is related to a variety of other liquid biopsy methods being commercially developed for early cancer detection using ctDNA and proteins (e.g., CancerSEEK / DETECT-A ), cfDNA fragmentation patterns (e.g., DELFI), and DNA methylation (e.g., cfMeDIP-Seq, Grail). While the CLiP method has not yet been broadly applied for population-based cancer screening, it has been shown to distinguish discriminate early-stage lung cancers from risk-matched controls across multiple cohorts of patients enrolled across the US.

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