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  ELIZA

  ELIZA is an early natural language processing computer program developed from 1964 to 1967 at MIT by Joseph Weizenbaum. Created to explore communication between humans and machines, ELIZA simulated conversation by using a pattern matching and substitution methodology that gave users an illusion of understanding on the part of the program, but gave no response that could be considered really understanding what was being said by either party. Whereas the ELIZA program itself was written (originally) in MAD-SLIP, the pattern matching directives that contained most of its language capability were provided in separate "scripts", represented in a Lisp-like expression. The most famous script, DOCTOR, simulated a psychotherapist of the Rogerian school (in which the therapist often reflects back the patient's words to the patient), and used rules, dictated in the script, to respond with non-directional questions to user inputs. As such, ELIZA was one of the first chatbots (originally "chatterbots") and one of the first programs capable of attempting the Turing test. Weizenbaum intended the program as a method to explore communication between humans and machines. He was surprised that some people, including his secretary, attributed human-like feelings to the computer program, a phenomenon that came to be called the ELIZA effect. Many academics believed that the program would be able to positively influence the lives of many people, particularly those with psychological issues, and that it could aid doctors working on such patients' treatment. While ELIZA was capable of engaging in discourse, it could not converse with true understanding. However, many early users were convinced of ELIZA's intelligence and understanding, despite Weizenbaum's insistence to the contrary. The original ELIZA source code had been missing since its creation in the 1960s, as it was not common to publish articles that included source code at that time. However, more recently the MAD-SLIP source code was discovered in the MIT archives and published on various platforms, such as the Internet Archive. The source code is of high historical interest since it demonstrates not only the specificity of programming languages and techniques at that time, but also the beginning of software layering and abstraction as a means of achieving sophisticated software programming. == Overview == Joseph Weizenbaum's ELIZA, running the DOCTOR script, created a conversational interaction somewhat similar to what might take place in the office of "a [non-directive] psychotherapist in an initial psychiatric interview" and to "demonstrate that the communication between man and machine was superficial". While ELIZA is best known for acting in the manner of a psychotherapist, the speech patterns are due to the data and instructions supplied by the DOCTOR script. ELIZA itself examined the text for keywords, applied values to said keywords, and transformed the input into an output; the script that ELIZA ran determined the keywords, set the values of keywords, and set the rules of transformation for the output. Weizenbaum chose to make the DOCTOR script in the context of psychotherapy to "sidestep the problem of giving the program a data base of real-world knowledge", allowing it to reflect back the patient's statements to carry the conversation forward. The result was a somewhat intelligent-seeming response that reportedly deceived some early users of the program. Weizenbaum named his program ELIZA after Eliza Doolittle, a working-class character in George Bernard Shaw's Pygmalion (also appearing in the musical My Fair Lady, which was based on the play and was hugely popular at the time). According to Weizenbaum, ELIZA's ability to be "incrementally improved" by various users made it similar to Eliza Doolittle, since Eliza Doolittle was taught to speak with an upper-class accent in Shaw's play. However, unlike the human character in Shaw's play, ELIZA is incapable of learning new patterns of speech or new words through interaction alone. Edits must be made directly to ELIZA's active script in order to change the manner by which the program operates. Weizenbaum first implemented ELIZA in his own SLIP list-processing language, where, depending upon the initial entries by the user, the illusion of human intelligence could appear, or be dispelled through several interchanges. Some of ELIZA's responses were so convincing that Weizenbaum and several others have anecdotes of users becoming emotionally attached to the program, occasionally forgetting that they were conversing with a computer. Weizenbaum's own secretary reportedly asked Weizenbaum to leave the room so that she and ELIZA could have a real conversation. Weizenbaum was surprised by this, later writing: "I had not realized ... that extremely short exposures to a relatively simple computer program could induce powerful delusional thinking in quite normal people." In 1966, interactive computing (via a teletype) was new. It was 11 years before the personal computer became familiar to the general public, and three decades before most people encountered attempts at natural language processing in Internet services like Ask.com or PC help systems such as Microsoft Office Clippit. Although those programs included years of research and work, ELIZA remains a milestone because it was the first time a programmer had attempted such a human-machine interaction with the goal of creating the illusion (however brief) of human–human interaction. At the ICCC 1972, ELIZA was brought together with another early artificial-intelligence program named PARRY for a computer-only conversation. While ELIZA was built to speak as a doctor, PARRY was intended to simulate a patient with schizophrenia. == Design and implementation == Weizenbaum originally wrote ELIZA in MAD-SLIP for CTSS on an IBM 7094 as a program to make natural-language conversation possible with a computer. To accomplish this, Weizenbaum identified five "fundamental technical problems" for ELIZA to overcome: the identification of key words, the discovery of a minimal context, the choice of appropriate transformations, the generation of responses in the absence of key words, and the provision of an editing capability for ELIZA scripts. Weizenbaum solved these problems and made ELIZA such that it had no built-in contextual framework or universe of discourse. However, this required ELIZA to have a script of instructions on how to respond to inputs from users. ELIZA starts its process of responding to an input by a user by first examining the text input for a "keyword". A "keyword" is a word designated as important by the acting ELIZA script, which assigns to each keyword a precedence number, or a RANK, designed by the programmer. If such words are found, they are put into a "keystack", with the keyword of the highest RANK at the top. The input sentence is then manipulated and transformed as the rule associated with the keyword of the highest RANK directs. For example, when the DOCTOR script encounters words such as "alike" or "same", it would output a message pertaining to similarity, in this case "In what way?", as these words had high precedence number. This also demonstrates how certain words, as dictated by the script, can be manipulated regardless of contextual considerations, such as switching first-person pronouns and second-person pronouns and vice versa, as these too had high precedence numbers. Such words with high precedence numbers are deemed superior to conversational patterns and are treated independently of contextual patterns. Following the first examination, the next step of the process is to apply an appropriate transformation rule, which includes two parts: the "decomposition rule" and the "reassembly rule". First, the input is reviewed for syntactical patterns in order to establish the minimal context necessary to respond. Using the keywords and other nearby words from the input, different disassembly rules are tested until an appropriate pattern is found. Using the script's rules, the sentence is then "dismantled" and arranged into sections of the component parts as the "decomposition rule for the highest-ranking keyword" dictates. The example that Weizenbaum gives is the input "You are very helpful", which is transformed to "I are very helpful". This is then broken into (1) empty (2) "I" (3) "are" (4) "very helpful". The decomposition rule has broken the phrase into four small segments that contain both the keywords and the information in the sentence. The decomposition rule then designates a particular reassembly rule, or set of reassembly rules, to follow when reconstructing the sentence. The reassembly rule takes the fragments of the input that the decomposition rule had created, rearranges them, and adds in programmed words to create a response. Using Weizenbaum's example previously stated, such a reassembly rule would take the fragments and apply them to the phrase "What makes

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  Elastic map

  Elastic maps provide a tool for nonlinear dimensionality reduction. By their construction, they are a system of elastic springs embedded in the data space. This system approximates a low-dimensional manifold. The elastic coefficients of this system allow the switch from completely unstructured k-means clustering (zero elasticity) to the estimators located closely to linear PCA manifolds (for high bending and low stretching modules). With some intermediate values of the elasticity coefficients, this system effectively approximates non-linear principal manifolds. This approach is based on a mechanical analogy between principal manifolds, that are passing through "the middle" of the data distribution, and elastic membranes and plates. The method was developed by A.N. Gorban, A.Y. Zinovyev and A.A. Pitenko in 1996–1998. == Energy of elastic map == Let S {\displaystyle {\mathcal {S}}} be a data set in a finite-dimensional Euclidean space. Elastic map is represented by a set of nodes w j {\displaystyle {\bf {w}}_{j}} in the same space. Each datapoint s ∈ S {\displaystyle s\in {\mathcal {S}}} has a host node, namely the closest node w j {\displaystyle {\bf {w}}_{j}} (if there are several closest nodes then one takes the node with the smallest number). The data set S {\displaystyle {\mathcal {S}}} is divided into classes K j = { s | w j is a host of s } {\displaystyle K_{j}=\{s\ |\ {\bf {w}}_{j}{\mbox{ is a host of }}s\}} . The approximation energy D is the distortion D = 1 2 ∑ j = 1 k ∑ s ∈ K j ‖ s − w j ‖ 2 {\displaystyle D={\frac {1}{2}}\sum _{j=1}^{k}\sum _{s\in K_{j}}\|s-{\bf {w}}_{j}\|^{2}} , which is the energy of the springs with unit elasticity which connect each data point with its host node. It is possible to apply weighting factors to the terms of this sum, for example to reflect the standard deviation of the probability density function of any subset of data points { s i } {\displaystyle \{s_{i}\}} . On the set of nodes an additional structure is defined. Some pairs of nodes, ( w i , w j ) {\displaystyle ({\bf {w}}_{i},{\bf {w}}_{j})} , are connected by elastic edges. Call this set of pairs E {\displaystyle E} . Some triplets of nodes, ( w i , w j , w k ) {\displaystyle ({\bf {w}}_{i},{\bf {w}}_{j},{\bf {w}}_{k})} , form bending ribs. Call this set of triplets G {\displaystyle G} . The stretching energy is U E = 1 2 λ ∑ ( w i , w j ) ∈ E ‖ w i − w j ‖ 2 {\displaystyle U_{E}={\frac {1}{2}}\lambda \sum _{({\bf {w}}_{i},{\bf {w}}_{j})\in E}\|{\bf {w}}_{i}-{\bf {w}}_{j}\|^{2}} , The bending energy is U G = 1 2 μ ∑ ( w i , w j , w k ) ∈ G ‖ w i − 2 w j + w k ‖ 2 {\displaystyle U_{G}={\frac {1}{2}}\mu \sum _{({\bf {w}}_{i},{\bf {w}}_{j},{\bf {w}}_{k})\in G}\|{\bf {w}}_{i}-2{\bf {w}}_{j}+{\bf {w}}_{k}\|^{2}} , where λ {\displaystyle \lambda } and μ {\displaystyle \mu } are the stretching and bending moduli respectively. The stretching energy is sometimes referred to as the membrane, while the bending energy is referred to as the thin plate term. For example, on the 2D rectangular grid the elastic edges are just vertical and horizontal edges (pairs of closest vertices) and the bending ribs are the vertical or horizontal triplets of consecutive (closest) vertices. The total energy of the elastic map is thus U = D + U E + U G . {\displaystyle U=D+U_{E}+U_{G}.} The position of the nodes { w j } {\displaystyle \{{\bf {w}}_{j}\}} is determined by the mechanical equilibrium of the elastic map, i.e. its location is such that it minimizes the total energy U {\displaystyle U} . == Expectation-maximization algorithm == For a given splitting of dataset S {\displaystyle {\mathcal {S}}} in classes K j {\displaystyle K_{j}} , minimization of the quadratic functional U {\displaystyle U} is a linear problem with the sparse matrix of coefficients. Therefore, similar to principal component analysis or k-means, a splitting method is used: For given { w j } {\displaystyle \{{\bf {w}}_{j}\}} find { K j } {\displaystyle \{K_{j}\}} ; For given { K j } {\displaystyle \{K_{j}\}} minimize U {\displaystyle U} and find { w j } {\displaystyle \{{\bf {w}}_{j}\}} ; If no change, terminate. This expectation-maximization algorithm guarantees a local minimum of U {\displaystyle U} . For improving the approximation various additional methods are proposed. For example, the softening strategy is used. This strategy starts with a rigid grids (small length, small bending and large elasticity modules λ {\displaystyle \lambda } and μ {\displaystyle \mu } coefficients) and finishes with soft grids (small λ {\displaystyle \lambda } and μ {\displaystyle \mu } ). The training goes in several epochs, each epoch with its own grid rigidness. Another adaptive strategy is growing net: one starts from a small number of nodes and gradually adds new nodes. Each epoch goes with its own number of nodes. == Applications == Most important applications of the method and free software are in bioinformatics for exploratory data analysis and visualisation of multidimensional data, for data visualisation in economics, social and political sciences, as an auxiliary tool for data mapping in geographic informational systems and for visualisation of data of various nature. The method is applied in quantitative biology for reconstructing the curved surface of a tree leaf from a stack of light microscopy images. This reconstruction is used for quantifying the geodesic distances between trichomes and their patterning, which is a marker of the capability of a plant to resist to pathogenes. Recently, the method is adapted as a support tool in the decision process underlying the selection, optimization, and management of financial portfolios. The method of elastic maps has been systematically tested and compared with several machine learning methods on the applied problem of identification of the flow regime of a gas-liquid flow in a pipe. There are various regimes: Single phase water or air flow, Bubbly flow, Bubbly-slug flow, Slug flow, Slug-churn flow, Churn flow, Churn-annular flow, and Annular flow. The simplest and most common method used to identify the flow regime is visual observation. This approach is, however, subjective and unsuitable for relatively high gas and liquid flow rates. Therefore, the machine learning methods are proposed by many authors. The methods are applied to differential pressure data collected during a calibration process. The method of elastic maps provided a 2D map, where the area of each regime is represented. The comparison with some other machine learning methods is presented in Table 1 for various pipe diameters and pressure. Here, ANN stands for the backpropagation artificial neural networks, SVM stands for the support vector machine, SOM for the self-organizing maps. The hybrid technology was developed for engineering applications. In this technology, elastic maps are used in combination with Principal Component Analysis (PCA), Independent Component Analysis (ICA) and backpropagation ANN. The textbook provides a systematic comparison of elastic maps and self-organizing maps (SOMs) in applications to economic and financial decision-making.

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  Shattered set

  A class of sets is said to shatter another set if it is possible to "pick out" any element of that set using intersection. The concept of shattered sets plays an important role in Vapnik–Chervonenkis theory, also known as VC-theory. Shattering and VC-theory are used in the study of empirical processes as well as in statistical computational learning theory. == Definition == Suppose A is a set and C is a class of sets. The class C shatters the set A if for each subset a of A, there is some element c of C such that a = c ∩ A . {\displaystyle a=c\cap A.} Equivalently, C shatters A when their intersection is equal to A's power set: P(A) = { c ∩ A | c ∈ C }. We employ the letter C to refer to a "class" or "collection" of sets, as in a Vapnik–Chervonenkis class (VC-class). The set A is often assumed to be finite because, in empirical processes, we are interested in the shattering of finite sets of data points. == Example == We will show that the class of all discs in the plane (two-dimensional space) does not shatter every set of four points on the unit circle, yet the class of all convex sets in the plane does shatter every finite set of points on the unit circle. Let A be a set of four points on the unit circle and let C be the class of all discs. To test where C shatters A, we attempt to draw a disc around every subset of points in A. First, we draw a disc around the subsets of each isolated point. Next, we try to draw a disc around every subset of point pairs. This turns out to be doable for adjacent points, but impossible for points on opposite sides of the circle. Any attempt to include those points on the opposite side will necessarily include other points not in that pair. Hence, any pair of opposite points cannot be isolated out of A using intersections with class C and so C does not shatter A. As visualized below: Because there is some subset which can not be isolated by any disc in C, we conclude then that A is not shattered by C. And, with a bit of thought, we can prove that no set of four points is shattered by this C. However, if we redefine C to be the class of all elliptical discs, we find that we can still isolate all the subsets from above, as well as the points that were formerly problematic. Thus, this specific set of 4 points is shattered by the class of elliptical discs. Visualized below: With a bit of thought, we could generalize that any set of finite points on a unit circle could be shattered by the class of all convex sets (visualize connecting the dots). == Shatter coefficient == To quantify the richness of a collection C of sets, we use the concept of shattering coefficients (also known as the growth function). For a collection C of sets s ⊂ Ω {\displaystyle s\subset \Omega } , Ω {\displaystyle \Omega } being any space, often a sample space, we define the nth shattering coefficient of C as S C ( n ) = max ∀ x 1 , x 2 , … , x n ∈ Ω card ⁡ { { x 1 , x 2 , … , x n } ∩ s , s ∈ C } {\displaystyle S_{C}(n)=\max _{\forall x_{1},x_{2},\dots ,x_{n}\in \Omega }\operatorname {card} \{\,\{\,x_{1},x_{2},\dots ,x_{n}\}\cap s,s\in C\}} where card {\displaystyle \operatorname {card} } denotes the cardinality of the set and x 1 , x 2 , … , x n ∈ Ω {\displaystyle x_{1},x_{2},\dots ,x_{n}\in \Omega } is any set of n points,. S C ( n ) {\displaystyle S_{C}(n)} is the largest number of subsets of any set A of n points that can be formed by intersecting A with the sets in collection C. For example, if set A contains 3 points, its power set, P ( A ) {\displaystyle P(A)} , contains 2 3 = 8 {\displaystyle 2^{3}=8} elements. If C shatters A, its shattering coefficient(3) would be 8 and S C ( 2 ) {\displaystyle S_{C}(2)} would be 2 2 = 4 {\displaystyle 2^{2}=4} . However, if one of those sets in P ( A ) {\displaystyle P(A)} cannot be obtained through intersections in c, then S C ( 3 ) {\displaystyle S_{C}(3)} would only be 7. If none of those sets can be obtained, S C ( 3 ) {\displaystyle S_{C}(3)} would be 0. Additionally, if S C ( 2 ) = 3 {\displaystyle S_{C}(2)=3} , for example, then there is an element in the set of all 2-point sets from A that cannot be obtained from intersections with C. It follows from this that S C ( 3 ) {\displaystyle S_{C}(3)} would also be less than 8 (i.e. C would not shatter A) because we have already located a "missing" set in the smaller power set of 2-point sets. This example illustrates some properties of S C ( n ) {\displaystyle S_{C}(n)} : S C ( n ) ≤ 2 n {\displaystyle S_{C}(n)\leq 2^{n}} for all n because { s ∩ A | s ∈ C } ⊆ P ( A ) {\displaystyle \{s\cap A|s\in C\}\subseteq P(A)} for any A ⊆ Ω {\displaystyle A\subseteq \Omega } . If S C ( n ) = 2 n {\displaystyle S_{C}(n)=2^{n}} , that means there is a set of cardinality n, which can be shattered by C. If S C ( N ) < 2 N {\displaystyle S_{C}(N)<2^{N}} for some N > 1 {\displaystyle N>1} then S C ( n ) < 2 n {\displaystyle S_{C}(n)<2^{n}} for all n ≥ N {\displaystyle n\geq N} . The third property means that if C cannot shatter any set of cardinality N then it can not shatter sets of larger cardinalities. == Vapnik–Chervonenkis class == If A cannot be shattered by C, there will be a smallest value of n that makes the shatter coefficient(n) less than 2 n {\displaystyle 2^{n}} because as n gets larger, there are more sets that could be missed. Alternatively, there is also a largest value of n for which the S C ( n ) {\displaystyle S_{C}(n)} is still 2 n {\displaystyle 2^{n}} , because as n gets smaller, there are fewer sets that could be omitted. The extreme of this is S C ( 0 ) {\displaystyle S_{C}(0)} (the shattering coefficient of the empty set), which must always be 2 0 = 1 {\displaystyle 2^{0}=1} . These statements lends themselves to defining the VC dimension of a class C as: V C ( C ) = min n { n : S C ( n ) < 2 n } {\displaystyle VC(C)={\underset {n}{\min }}\{n:S_{C}(n)<2^{n}\}\,} or, alternatively, as V C 0 ( C ) = max n { n : S C ( n ) = 2 n } . {\displaystyle VC_{0}(C)={\underset {n}{\max }}\{n:S_{C}(n)=2^{n}\}.\,} Note that V C ( C ) = V C 0 ( C ) + 1. {\displaystyle VC(C)=VC_{0}(C)+1.} . The VC dimension is usually defined as V C 0 {\displaystyle VC_{0}} , the largest cardinality of points chosen that will still shatter A (i.e. n such that S C ( n ) = 2 n {\displaystyle S_{C}(n)=2^{n}} ). Altneratively, if for any n there is a set of cardinality n which can be shattered by C, then S C ( n ) = 2 n {\displaystyle S_{C}(n)=2^{n}} for all n and the VC dimension of this class C is infinite. A class with finite VC dimension is called a Vapnik–Chervonenkis class or VC class. A class C is uniformly Glivenko–Cantelli if and only if it is a VC class.

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  Low-rank approximation

  In mathematics, low-rank approximation refers to the process of approximating a given matrix by a matrix of lower rank. More precisely, it is a minimization problem, in which the cost function measures the fit between a given matrix (the data) and an approximating matrix (the optimization variable), subject to a constraint that the approximating matrix has reduced rank. The problem is used for mathematical modeling and data compression. The rank constraint is related to a constraint on the complexity of a model that fits the data. In applications, often there are other constraints on the approximating matrix apart from the rank constraint, e.g., non-negativity and Hankel structure. Low-rank approximation is closely related to numerous other techniques, including principal component analysis, factor analysis, total least squares, latent semantic analysis, orthogonal regression, and dynamic mode decomposition. == Definition == Given structure specification S : R n p → R m × n {\displaystyle {\mathcal {S}}:\mathbb {R} ^{n_{p}}\to \mathbb {R} ^{m\times n}} , vector of structure parameters p ∈ R n p {\displaystyle p\in \mathbb {R} ^{n_{p}}} , norm ‖ ⋅ ‖ {\displaystyle \|\cdot \|} , and desired rank r {\displaystyle r} , minimize over p ^ ‖ p − p ^ ‖ subject to rank ⁡ ( S ( p ^ ) ) ≤ r . {\displaystyle {\text{minimize}}\quad {\text{over }}{\widehat {p}}\quad \|p-{\widehat {p}}\|\quad {\text{subject to}}\quad \operatorname {rank} {\big (}{\mathcal {S}}({\widehat {p}}){\big )}\leq r.} == Applications == Linear system identification, in which case the approximating matrix is Hankel structured. Machine learning, in which case the approximating matrix is nonlinearly structured. Recommender systems, in which cases the data matrix has missing values and the approximation is categorical. Distance matrix completion, in which case there is a positive definiteness constraint. Natural language processing, in which case the approximation is nonnegative. Computer algebra, in which case the approximation is Sylvester structured. Matrix product states, in which case the approximation is usually rescaled to have fixed Frobenius norm. == Basic low-rank approximation problem == The unstructured problem with fit measured by the Frobenius norm, i.e., minimize over D ^ ‖ D − D ^ ‖ F subject to rank ⁡ ( D ^ ) ≤ r {\displaystyle {\text{minimize}}\quad {\text{over }}{\widehat {D}}\quad \|D-{\widehat {D}}\|_{\text{F}}\quad {\text{subject to}}\quad \operatorname {rank} {\big (}{\widehat {D}}{\big )}\leq r} has an analytic solution in terms of the singular value decomposition of the data matrix. The result is referred to as the matrix approximation lemma or Eckart–Young–Mirsky theorem. This problem was originally solved by Erhard Schmidt in the infinite dimensional context of integral operators (although his methods easily generalize to arbitrary compact operators on Hilbert spaces) and later rediscovered by C. Eckart and G. Young. L. Mirsky generalized the result to arbitrary unitarily invariant norms. Let D = U Σ V ⊤ ∈ R m × n , m ≥ n {\displaystyle D=U\Sigma V^{\top }\in \mathbb {R} ^{m\times n},\quad m\geq n} be the singular value decomposition of D {\displaystyle D} , where Σ =: diag ⁡ ( σ 1 , … , σ r ) {\displaystyle \Sigma =:\operatorname {diag} (\sigma _{1},\ldots ,\sigma _{r})} , where r ≤ min { m , n } = n {\displaystyle r\leq \min\{m,n\}=n} , is the m × n {\displaystyle m\times n} rectangular diagonal matrix with r {\displaystyle r} non-zero singular values σ 1 ≥ … ≥ σ r > σ r + 1 = … = σ n = 0 {\displaystyle \sigma _{1}\geq \ldots \geq \sigma _{r}>\sigma _{r+1}=\ldots =\sigma _{n}=0} . For a given k ∈ { 1 , … , r } {\displaystyle k\in \{1,\dots ,r\}} , partition U {\displaystyle U} , Σ {\displaystyle \Sigma } , and V {\displaystyle V} as follows: U =: [ U 1 U 2 ] , Σ =: [ Σ 1 0 0 Σ 2 ] , and V =: [ V 1 V 2 ] , {\displaystyle U=:{\begin{bmatrix}U_{1}&U_{2}\end{bmatrix}},\quad \Sigma =:{\begin{bmatrix}\Sigma _{1}&0\\0&\Sigma _{2}\end{bmatrix}},\quad {\text{and}}\quad V=:{\begin{bmatrix}V_{1}&V_{2}\end{bmatrix}},} where U 1 {\displaystyle U_{1}} is m × k {\displaystyle m\times k} , Σ 1 {\displaystyle \Sigma _{1}} is k × k {\displaystyle k\times k} , and V 1 {\displaystyle V_{1}} is n × k {\displaystyle n\times k} . Then the rank k {\displaystyle k} matrix D ^ ∗ := U 1 Σ 1 V 1 ⊤ , {\displaystyle {\widehat {D}}^{}:=U_{1}\Sigma _{1}V_{1}^{\top },} obtained from the truncated singular value decomposition is such that ‖ D − D ^ ∗ ‖ F = min rank ⁡ ( D ^ ) ≤ k ‖ D − D ^ ‖ F = σ k + 1 2 + ⋯ + σ r 2 . {\displaystyle \|D-{\widehat {D}}^{}\|_{\text{F}}=\min _{\operatorname {rank} ({\widehat {D}})\leq k}\|D-{\widehat {D}}\|_{\text{F}}={\sqrt {\sigma _{k+1}^{2}+\cdots +\sigma _{r}^{2}}}.} The minimizer D ^ ∗ {\displaystyle {\widehat {D}}^{}} is unique if and only if σ k > σ k + 1 {\displaystyle \sigma _{k}>\sigma _{k+1}} . == Proof of Eckart–Young–Mirsky theorem (for spectral norm) == Let A ∈ R m × n {\displaystyle A\in \mathbb {R} ^{m\times n}} be a real (possibly rectangular) matrix with m ≤ n {\displaystyle m\leq n} . Suppose that A = U Σ V ⊤ {\displaystyle A=U\Sigma V^{\top }} is the singular value decomposition of A {\displaystyle A} . Recall that U {\displaystyle U} and V {\displaystyle V} are orthogonal matrices, and Σ {\displaystyle \Sigma } is an m × n {\displaystyle m\times n} diagonal matrix with entries ( σ 1 , σ 2 , ⋯ , σ m ) {\displaystyle (\sigma _{1},\sigma _{2},\cdots ,\sigma _{m})} such that σ 1 ≥ σ 2 ≥ ⋯ ≥ σ m ≥ 0 {\displaystyle \sigma _{1}\geq \sigma _{2}\geq \cdots \geq \sigma _{m}\geq 0} . We claim that the best rank- k {\displaystyle k} approximation to A {\displaystyle A} in the spectral norm, denoted by ‖ ⋅ ‖ 2 {\displaystyle \|\cdot \|_{2}} , is given by A k := ∑ i = 1 k σ i u i v i ⊤ {\displaystyle A_{k}:=\sum _{i=1}^{k}\sigma _{i}u_{i}v_{i}^{\top }} where u i {\displaystyle u_{i}} and v i {\displaystyle v_{i}} denote the i {\displaystyle i} th column of U {\displaystyle U} and V {\displaystyle V} , respectively. First, note that we have ‖ A − A k ‖ 2 = ‖ ∑ i = 1 n σ i u i v i ⊤ − ∑ i = 1 k σ i u i v i ⊤ ‖ 2 = ‖ ∑ i = k + 1 n σ i u i v i ⊤ ‖ 2 = σ k + 1 {\displaystyle \|A-A_{k}\|_{2}=\left\|\sum _{i=1}^{\color {red}{n}}\sigma _{i}u_{i}v_{i}^{\top }-\sum _{i=1}^{\color {red}{k}}\sigma _{i}u_{i}v_{i}^{\top }\right\|_{2}=\left\|\sum _{i=\color {red}{k+1}}^{n}\sigma _{i}u_{i}v_{i}^{\top }\right\|_{2}=\sigma _{k+1}} Therefore, we need to show that if B k = X Y ⊤ {\displaystyle B_{k}=XY^{\top }} where X {\displaystyle X} and Y {\displaystyle Y} have k {\displaystyle k} columns then ‖ A − A k ‖ 2 = σ k + 1 ≤ ‖ A − B k ‖ 2 {\displaystyle \|A-A_{k}\|_{2}=\sigma _{k+1}\leq \|A-B_{k}\|_{2}} . Since Y {\displaystyle Y} has k {\displaystyle k} columns, then there must be a nontrivial linear combination of the first k + 1 {\displaystyle k+1} columns of V {\displaystyle V} , i.e., w = γ 1 v 1 + ⋯ + γ k + 1 v k + 1 , {\displaystyle w=\gamma _{1}v_{1}+\cdots +\gamma _{k+1}v_{k+1},} such that Y ⊤ w = 0 {\displaystyle Y^{\top }w=0} . Without loss of generality, we can scale w {\displaystyle w} so that ‖ w ‖ 2 = 1 {\displaystyle \|w\|_{2}=1} or (equivalently) γ 1 2 + ⋯ + γ k + 1 2 = 1 {\displaystyle \gamma _{1}^{2}+\cdots +\gamma _{k+1}^{2}=1} . Therefore, ‖ A − B k ‖ 2 2 ≥ ‖ ( A − B k ) w ‖ 2 2 = ‖ A w ‖ 2 2 = γ 1 2 σ 1 2 + ⋯ + γ k + 1 2 σ k + 1 2 ≥ σ k + 1 2 . {\displaystyle \|A-B_{k}\|_{2}^{2}\geq \|(A-B_{k})w\|_{2}^{2}=\|Aw\|_{2}^{2}=\gamma _{1}^{2}\sigma _{1}^{2}+\cdots +\gamma _{k+1}^{2}\sigma _{k+1}^{2}\geq \sigma _{k+1}^{2}.} The result follows by taking the square root of both sides of the above inequality. == Proof of Eckart–Young–Mirsky theorem (for Frobenius norm) == Let A ∈ R m × n {\displaystyle A\in \mathbb {R} ^{m\times n}} be a real (possibly rectangular) matrix with m ≤ n {\displaystyle m\leq n} . Suppose that A = U Σ V ⊤ {\displaystyle A=U\Sigma V^{\top }} is the singular value decomposition of A {\displaystyle A} . We claim that the best rank k {\displaystyle k} approximation to A {\displaystyle A} in the Frobenius norm, denoted by ‖ ⋅ ‖ F {\displaystyle \|\cdot \|_{F}} , is given by A k = ∑ i = 1 k σ i u i v i ⊤ {\displaystyle A_{k}=\sum _{i=1}^{k}\sigma _{i}u_{i}v_{i}^{\top }} where u i {\displaystyle u_{i}} and v i {\displaystyle v_{i}} denote the i {\displaystyle i} th column of U {\displaystyle U} and V {\displaystyle V} , respectively. First, note that we have ‖ A − A k ‖ F 2 = ‖ ∑ i = k + 1 n σ i u i v i ⊤ ‖ F 2 = ∑ i = k + 1 n σ i 2 {\displaystyle \|A-A_{k}\|_{F}^{2}=\left\|\sum _{i=k+1}^{n}\sigma _{i}u_{i}v_{i}^{\top }\right\|_{F}^{2}=\sum _{i=k+1}^{n}\sigma _{i}^{2}} Therefore, we need to show that if B k = X Y ⊤ {\displaystyle B_{k}=XY^{\top }} where X {\displaystyle X} and Y {\displaystyle Y} have k {\displaystyle k} columns then ‖ A − A k ‖ F 2 = ∑ i = k + 1 n σ i 2 ≤ ‖ A − B k ‖ F 2 . {\displaystyle \|A-A_{k}\|_{F}^{2}=\sum _{i=k+1}^{n}\sigma _{i}^{2}\leq \|A-B_{k}\|_{F}^{2}.} By the triangle inequality with the spectral norm

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  Accelerated Linear Algebra

  XLA (Accelerated Linear Algebra) is an open-source compiler for machine learning developed by the OpenXLA project. XLA is designed to improve the performance of machine learning models by optimizing the computation graphs at a lower level, making it particularly useful for large-scale computations and high-performance machine learning models. Key features of XLA include: Compilation of Computation Graphs: Compiles computation graphs into efficient machine code. Optimization Techniques: Applies operation fusion, memory optimization, and other techniques. Hardware Support: Optimizes models for various hardware, including CPUs, GPUs, and NPUs. Improved Model Execution Time: Aims to reduce machine learning models' execution time for both training and inference. Seamless Integration: Can be used with existing machine learning code with minimal changes. XLA represents a significant step in optimizing machine learning models, providing developers with tools to enhance computational efficiency and performance. == OpenXLA Project == OpenXLA Project is an open-source machine learning compiler and infrastructure initiative intended to provide a common set of tools for compiling and deploying machine learning models across different frameworks and hardware platforms. It provides a modular compilation stack that can be used by major deep learning frameworks like JAX, PyTorch, and TensorFlow. The project focuses on supplying shared components for optimization, portability, and execution across CPUs, GPUs, and specialized accelerators. Its design emphasizes interoperability between frameworks and a standardized set of representations for model computation. == Components == The OpenXLA ecosystem includes several core components: XLA – A deep learning compiler that optimizes computational graphs for multiple hardware targets. PJRT – A runtime interface that allows different back-ends to connect to XLA through a consistent API. StableHLO – A high-level operator set intended to serve as a stable, portable representation for ML models across compilers and frameworks. Shardy – An MLIR-based system for describing and transforming models that run in distributed or multi-device environments. Additional profiling, testing, and integration tools maintained under the OpenXLA organization. == Users and adopters == Several machine learning frameworks can use or interoperate with OpenXLA components, including JAX, TensorFlow, and parts of the PyTorch ecosystem. The project is developed with participation from multiple hardware and software organizations that contribute back-end integrations, testing, or specifications for their devices. This includes Alibaba, Amazon Web Services, AMD, Anyscale, Apple, Arm, Cerebras, Google, Graphcore, Hugging Face, Intel, Meta, NVIDIA and SiFive. == Supported target devices == x86-64 ARM64 NVIDIA GPU AMD GPU Intel GPU Apple GPU Google TPU AWS Trainium, Inferentia Cerebras Graphcore IPU == Governance == OpenXLA is developed as a community project with its work carried out in public repositories, discussion forums, and design meetings. Some components, such as StableHLO, began with stewardship from specific organizations and have outlined plans for more formal and distributed governance models as the project matures. == History == The project was announced in 2022 as an effort to coordinate development of ML compiler technologies across major AI companies, notably: Alibaba, Amazon Web Services, AMD, Anyscale, Apple, Arm, Cerebras, Google, Graphcore, Hugging Face, Intel, Meta, NVIDIA and SiFive.. It consolidated the XLA compiler, introduced StableHLO as a portable operator set, and created a unified structure for additional tools. Development continues within multiple repositories under the OpenXLA umbrella. It was founded by Eugene Burmako, James Rubin, Magnus Hyttsten, Mehdi Amini, Navid Khajouei, and Thea Lamkin from Google's Machine Learning organization.

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  Swish function

  The swish function is a family of mathematical function defined as follows: swish β ⁡ ( x ) = x sigmoid ⁡ ( β x ) = x 1 + e − β x . {\displaystyle \operatorname {swish} _{\beta }(x)=x\operatorname {sigmoid} (\beta x)={\frac {x}{1+e^{-\beta x}}}.} where β {\displaystyle \beta } can be constant (usually set to 1) or trainable and "sigmoid" refers to the logistic function. The swish family was designed to smoothly interpolate between a linear function and the Rectified linear unit (ReLU) function. When considering positive values, Swish is a particular case of doubly parameterized sigmoid shrinkage function defined in . Variants of the swish function include Mish. == Special values == For β = 0, the function is linear: f(x) = x/2. For β = 1, the function is the Sigmoid Linear Unit (SiLU). For β = 1.702, the function approximates GeLU. With β → ∞, the function converges to ReLU. Thus, the swish family smoothly interpolates between a linear function and the ReLU function. Since swish β ⁡ ( x ) = swish 1 ⁡ ( β x ) / β {\displaystyle \operatorname {swish} _{\beta }(x)=\operatorname {swish} _{1}(\beta x)/\beta } , all instances of swish have the same shape as the default swish 1 {\displaystyle \operatorname {swish} _{1}} , zoomed by β {\displaystyle \beta } . One usually sets β > 0 {\displaystyle \beta >0} . When β {\displaystyle \beta } is trainable, this constraint can be enforced by β = e b {\displaystyle \beta =e^{b}} , where b {\displaystyle b} is trainable. swish 1 ⁡ ( x ) = x 2 + x 2 4 − x 4 48 + x 6 480 + O ( x 8 ) {\displaystyle \operatorname {swish} _{1}(x)={\frac {x}{2}}+{\frac {x^{2}}{4}}-{\frac {x^{4}}{48}}+{\frac {x^{6}}{480}}+O\left(x^{8}\right)} swish 1 ⁡ ( x ) = x 2 tanh ⁡ ( x 2 ) + x 2 swish 1 ⁡ ( x ) + swish − 1 ⁡ ( x ) = x tanh ⁡ ( x 2 ) swish 1 ⁡ ( x ) − swish − 1 ⁡ ( x ) = x {\displaystyle {\begin{aligned}\operatorname {swish} _{1}(x)&={\frac {x}{2}}\tanh \left({\frac {x}{2}}\right)+{\frac {x}{2}}\\\operatorname {swish} _{1}(x)+\operatorname {swish} _{-1}(x)&=x\tanh \left({\frac {x}{2}}\right)\\\operatorname {swish} _{1}(x)-\operatorname {swish} _{-1}(x)&=x\end{aligned}}} == Derivatives == Because swish β ⁡ ( x ) = swish 1 ⁡ ( β x ) / β {\displaystyle \operatorname {swish} _{\beta }(x)=\operatorname {swish} _{1}(\beta x)/\beta } , it suffices to calculate its derivatives for the default case. swish 1 ′ ⁡ ( x ) = x + sinh ⁡ ( x ) 4 cosh 2 ⁡ ( x 2 ) + 1 2 {\displaystyle \operatorname {swish} _{1}'(x)={\frac {x+\sinh(x)}{4\cosh ^{2}\left({\frac {x}{2}}\right)}}+{\frac {1}{2}}} so swish 1 ′ ⁡ ( x ) − 1 2 {\displaystyle \operatorname {swish} _{1}'(x)-{\frac {1}{2}}} is odd. swish 1 ″ ⁡ ( x ) = 1 − x 2 tanh ⁡ ( x 2 ) 2 cosh 2 ⁡ ( x 2 ) {\displaystyle \operatorname {swish} _{1}''(x)={\frac {1-{\frac {x}{2}}\tanh \left({\frac {x}{2}}\right)}{2\cosh ^{2}\left({\frac {x}{2}}\right)}}} so swish 1 ″ ⁡ ( x ) {\displaystyle \operatorname {swish} _{1}''(x)} is even. == History == SiLU was first proposed alongside the GELU in 2016, then again proposed in 2017 as the Sigmoid-weighted Linear Unit (SiL) in reinforcement learning. The SiLU/SiL was then again proposed as the SWISH over a year after its initial discovery, originally proposed without the learnable parameter β, so that β implicitly equaled 1. The swish paper was then updated to propose the activation with the learnable parameter β. In 2017, after performing analysis on ImageNet data, researchers from Google indicated that using this function as an activation function in artificial neural networks improves the performance, compared to ReLU and sigmoid functions. It is believed that one reason for the improvement is that the swish function helps alleviate the vanishing gradient problem during backpropagation.

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  Structured kNN

  Structured k-nearest neighbours (SkNN) is a machine learning algorithm that generalizes k-nearest neighbors (k-NN). k-NN supports binary classification, multiclass classification, and regression, whereas SkNN allows training of a classifier for general structured output. For instance, a data sample might be a natural language sentence, and the output could be an annotated parse tree. Training a classifier consists of showing many instances of ground truth sample-output pairs. After training, the SkNN model is able to predict the corresponding output for new, unseen sample instances; that is, given a natural language sentence, the classifier can produce the most likely parse tree. == Training == As a training set, SkNN accepts sequences of elements with class labels. The type of element does not matter; the only requirement is a defined metric function that gives a distance between each pair of elements of a set. SkNN is based on idea of creating a graph, with each node representing a class label. There is an edge between a pair of nodes if there is a sequence of two elements in the training set with corresponding classes. The first step of SkNN training is the construction of such a graph from training sequences. There are two special nodes in the graph corresponding to sentence beginnings and ends: if a sequence starts with class C, the edge between node START and node C should be created. Like regular k-NN, the second part of SkNN training consists of storing the elements of a training sequence in a certain way. Each element of the training sequences is stored in the node related to the class of the previous element in the sequence. Every first element is stored in the START node. == Inference == Labelling input sequences by SkNN consists of finding the sequence of transitions in the graph, starting from node START. Each transition corresponds to a single element of the input sequence. As a result, the label of each element is determined as the target node label of the transition. The cost of the path is defined as the sum of all transitions, with the cost of transition from node A to node B being the distance from the current input sequence element to the nearest element of class B, stored in node A. Determining an optimal path may be performed using a modified Viterbi algorithm (where the sum of the distances is minimized, unlike the original algorithm which maximizes the product of probabilities).

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  Bioz

  Bioz is a search engine for life science experimentation. == History == Bioz was founded by Karin Lachmi and Daniel Levitt. Lachmi is a scientist who completed her postdoc in molecular and cellular biology at the Stanford University School of Medicine. During her lab work she found little available data regarding preferable lab tools, reagents and related products for experimentation. There are 50,000 vendors selling 300 million scientific products. She decided to start the company in order to provide researchers with adequate information for that purpose. Co-founder Daniel Levitt is an entrepreneur who sold his company WebAppoint to Microsoft in the year 2000. He also co-founded the company StemRad. At Bioz, Lachmi serves as the Chief Scientific Officer and Levitt serves as the chief executive officer. Bioz claims to have over a million researcher-users from 196 countries. Among the investors are Esther Dyson and the Stanford-StartX Fund. The company's advisory board includes Nobel Laureates in Chemistry Michael Levitt, Roger Kornberg, and Ada Yonath. == Technology == The company uses artificial intelligence, machine learning and natural language processing in order to extract experimentation data from scientific articles, such as the products that researchers used, the companies that supply the products, the protocol conditions that researchers selected, and the types of experiments and techniques. The algorithm ranks products based on how frequently they were used by researchers in their experiments, how recently a product was used, and the impact factor of the journal. The algorithm's output is a Bioz stars score for each product that was mentioned in an article. Bioz is a data-driven platform for product recommendations, which is contrary to platforms such as TripAdvisor and OpenTable that are based on user-generated reviews and ratings. The recommendations and scoring system that the company has developed are meant to assist researchers with the process of developing future medications and finding cures for diseases. They are guided towards products and techniques that were previously used by other researchers when planning and performing experiments. The company's revenue is based on selling SaaS subscriptions to researchers in biopharma companies. They also charge product suppliers for content syndication.

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  Echo Lake (software)

  Echo Lake (AKA Family Album Creator) was the most notable multimedia software product produced by Delrina, which debuted in June 1995. It was touted internally as a "cross [of] Quark Xpress and Myst". It featured an immersive 3D environment where a user could go to a virtual desktop in a virtual office and assemble video and audio clips along with images, and then print them out as either a virtual book other users of the program could use, or for print. It was a highly innovative product for its time, and ultimately was hampered by the inability of many users able to input their own multimedia content easily into a computer from that period. Creative Wonders bought the rights to the Echo Lake multimedia product, which was re-shaped as an introductory program on multimedia and re-released as Family Album Creator in 1996.

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  Generalized canonical correlation

  In statistics, the generalized canonical correlation analysis (gCCA), is a way of making sense of cross-correlation matrices between the sets of random variables when there are more than two sets. While a conventional CCA generalizes principal component analysis (PCA) to two sets of random variables, a gCCA generalizes PCA to more than two sets of random variables. The canonical variables represent those common factors that can be found by a large PCA of all of the transformed random variables after each set underwent its own PCA. == Applications == The Helmert-Wolf blocking (HWB) method of estimating linear regression parameters can find an optimal solution only if all cross-correlations between the data blocks are zero. They can always be made to vanish by introducing a new regression parameter for each common factor. The gCCA method can be used for finding those harmful common factors that create cross-correlation between the blocks. However, no optimal HWB solution exists if the random variables do not contain enough information on all of the new regression parameters.

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  (1+ε)-approximate nearest neighbor search

  (1+ε)-approximate nearest neighbor search is a variant of the nearest neighbor search problem. A solution to the (1+ε)-approximate nearest neighbor search is a point or multiple points within distance (1+ε) R from a query point, where R is the distance between the query point and its true nearest neighbor. Reasons to approximate nearest neighbor search include the space and time costs of exact solutions in high-dimensional spaces (see curse of dimensionality) and that in some domains, finding an approximate nearest neighbor is an acceptable solution. Approaches for solving (1+ε)-approximate nearest neighbor search include k-d trees, locality-sensitive hashing and brute-force search.

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  Swish function

  The swish function is a family of mathematical function defined as follows: swish β ⁡ ( x ) = x sigmoid ⁡ ( β x ) = x 1 + e − β x . {\displaystyle \operatorname {swish} _{\beta }(x)=x\operatorname {sigmoid} (\beta x)={\frac {x}{1+e^{-\beta x}}}.} where β {\displaystyle \beta } can be constant (usually set to 1) or trainable and "sigmoid" refers to the logistic function. The swish family was designed to smoothly interpolate between a linear function and the Rectified linear unit (ReLU) function. When considering positive values, Swish is a particular case of doubly parameterized sigmoid shrinkage function defined in . Variants of the swish function include Mish. == Special values == For β = 0, the function is linear: f(x) = x/2. For β = 1, the function is the Sigmoid Linear Unit (SiLU). For β = 1.702, the function approximates GeLU. With β → ∞, the function converges to ReLU. Thus, the swish family smoothly interpolates between a linear function and the ReLU function. Since swish β ⁡ ( x ) = swish 1 ⁡ ( β x ) / β {\displaystyle \operatorname {swish} _{\beta }(x)=\operatorname {swish} _{1}(\beta x)/\beta } , all instances of swish have the same shape as the default swish 1 {\displaystyle \operatorname {swish} _{1}} , zoomed by β {\displaystyle \beta } . One usually sets β > 0 {\displaystyle \beta >0} . When β {\displaystyle \beta } is trainable, this constraint can be enforced by β = e b {\displaystyle \beta =e^{b}} , where b {\displaystyle b} is trainable. swish 1 ⁡ ( x ) = x 2 + x 2 4 − x 4 48 + x 6 480 + O ( x 8 ) {\displaystyle \operatorname {swish} _{1}(x)={\frac {x}{2}}+{\frac {x^{2}}{4}}-{\frac {x^{4}}{48}}+{\frac {x^{6}}{480}}+O\left(x^{8}\right)} swish 1 ⁡ ( x ) = x 2 tanh ⁡ ( x 2 ) + x 2 swish 1 ⁡ ( x ) + swish − 1 ⁡ ( x ) = x tanh ⁡ ( x 2 ) swish 1 ⁡ ( x ) − swish − 1 ⁡ ( x ) = x {\displaystyle {\begin{aligned}\operatorname {swish} _{1}(x)&={\frac {x}{2}}\tanh \left({\frac {x}{2}}\right)+{\frac {x}{2}}\\\operatorname {swish} _{1}(x)+\operatorname {swish} _{-1}(x)&=x\tanh \left({\frac {x}{2}}\right)\\\operatorname {swish} _{1}(x)-\operatorname {swish} _{-1}(x)&=x\end{aligned}}} == Derivatives == Because swish β ⁡ ( x ) = swish 1 ⁡ ( β x ) / β {\displaystyle \operatorname {swish} _{\beta }(x)=\operatorname {swish} _{1}(\beta x)/\beta } , it suffices to calculate its derivatives for the default case. swish 1 ′ ⁡ ( x ) = x + sinh ⁡ ( x ) 4 cosh 2 ⁡ ( x 2 ) + 1 2 {\displaystyle \operatorname {swish} _{1}'(x)={\frac {x+\sinh(x)}{4\cosh ^{2}\left({\frac {x}{2}}\right)}}+{\frac {1}{2}}} so swish 1 ′ ⁡ ( x ) − 1 2 {\displaystyle \operatorname {swish} _{1}'(x)-{\frac {1}{2}}} is odd. swish 1 ″ ⁡ ( x ) = 1 − x 2 tanh ⁡ ( x 2 ) 2 cosh 2 ⁡ ( x 2 ) {\displaystyle \operatorname {swish} _{1}''(x)={\frac {1-{\frac {x}{2}}\tanh \left({\frac {x}{2}}\right)}{2\cosh ^{2}\left({\frac {x}{2}}\right)}}} so swish 1 ″ ⁡ ( x ) {\displaystyle \operatorname {swish} _{1}''(x)} is even. == History == SiLU was first proposed alongside the GELU in 2016, then again proposed in 2017 as the Sigmoid-weighted Linear Unit (SiL) in reinforcement learning. The SiLU/SiL was then again proposed as the SWISH over a year after its initial discovery, originally proposed without the learnable parameter β, so that β implicitly equaled 1. The swish paper was then updated to propose the activation with the learnable parameter β. In 2017, after performing analysis on ImageNet data, researchers from Google indicated that using this function as an activation function in artificial neural networks improves the performance, compared to ReLU and sigmoid functions. It is believed that one reason for the improvement is that the swish function helps alleviate the vanishing gradient problem during backpropagation.

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  List of Fortran software and tools

  This is a list of Fortran software and tools, including IDEs, compilers, libraries, debugging tools, numerical and scientific computing tools, and related projects. == Fortran compilers == Absoft Pro Fortran — Absoft Pro Fortran is discontinued and ran on Linux and macOS AOCC — from AMD Classic Flang — part of the LLVM Project LLVM Flang — part of the LLVM Project Fortran 77 — Fortran 77 was developed by Digital Equipment Corporation, it is discontinued. G95 – portable open-source Fortran 95 compiler GCC (GNU Fortran) PGI compilers – NVIDIA developed compilers after acquiring The Portland Group IBM XL Fortran — IBM XL Fortran is current and runs on Linux (Power/AIX) and integrates with Eclipse Intel Fortran Compiler – part of Intel OneAPI HPC toolkit LFortran — LFortran is current, cross-platform, and has IDE support. MinGW – cross compiler and forked into Mingw-w64 nAG Fortran Compiler - from nAG Open64 — Open64 is an open-source compiler that has been terminated and ran on Linux Open Watcom — Open Watcom is current, runs on MS-DOS and OS/2, and has IDE support. Oracle Fortran — Oracle Fortran is discontinued, ran on Linux and Solaris. ROSE — source-to-source compiler framework developed at Lawrence Livermore National Laboratory Silverfrost FTN95 — FTN95 from Silverfrost is current, runs on Windows, and has IDE support. == Integrated development environments (IDEs) and editors == Code::Blocks — supports Fortran with plugins Eclipse IDE — with Fortran support via Photran Emacs — extensible text editor with built-in Fortran modes and support for modern tooling via language servers Geany — lightweight cross-platform IDE based on GTK IntelliJ IDEA — cross-platform IDE by JetBrains with Fortran pluggin KDevelop — KDE-based IDE NetBeans — Apache software foundation IDE with Fortran configuration OpenWatcom — IDE and compiler suite for C, C++, and Fortran Simply Fortran — standalone Fortran IDE for Windows, Linux, and macOS Vim — modal text editor with native Fortran syntax support and extensive plugin-based development features Visual Studio — with Intel Fortran integration Visual Studio Code — supports Fortran via extensions == Mathematical libraries == == Scientific libraries == ABINIT — software suite to calculate optical, mechanical, vibrational, and other observable properties of materials Cantera — chemical kinetics, thermodynamics, and transport tool suite CERN Program Library — collection of Fortran libraries for physics applications from CERN CP2K — quantum chemistry and solid-state physics software package for atomistic simulations Dalton — molecular electronic structure program FFTPACK — subroutines for the fast Fourier transform Kinetic PreProcessor – open-source software tool used in atmospheric chemistry MESA — Modules for Experiments in Stellar Astrophysics Nek5000 — MPI parallel higher-order spectral element CFD solver NWChem — open-source high-performance computational chemistry software Octopus — real-space Time-Dependent Density Functional Theory code MODTRAN – model atmospheric propagation of electromagnetic radiation MOLCAS — quantum chemistry software package for multiconfigurational electronic structure calculations NOVAS – software library for astrometry-related numerical computations Physics Analysis Workstation – data analysis and graphical presentation in high-energy physics Quantum ESPRESSO — integrated suite for electronic-structure calculations and materials modeling SIESTA — first-principles materials simulation code using density functional theory Tinker — software tools for molecular design == Debugging and performance tools == GDB — GNU Debugger with Fortran support Valgrind — memory debugging and profiling tool VTune Profiler — performance analysis tool Allinea Forge — debugger and profiler for HPC applications == Build and package management == Autotools — build system supporting Fortran projects CMake — cross-platform build system supporting Fortran Make — build automation tool Spack — package manager for HPC software including Fortran libraries == Machine learning and AI libraries == Athena Fiats (Functional Inference And Training for Surrogates) FNN (Fortran Neural Network) FortNN Fortran-TF-lib (Fortran interface to TensorFlow) FTorch (Fortran interface to PyTorch) MlFortran RoseNNa == Parallel and high-performance computing tools == MPI Fortran bindings — standard interface for distributed-memory parallelism OpenMP — shared-memory parallel programming support through compiler directives Coarray Fortran — parallel programming model introduced in Fortran 2008 ScaLAPACK — parallel linear algebra package built on top of LAPACK == Testing frameworks == FUnit — open-source unit testing framework developed at NASA’s Langley Research Center, for Fortran 90, 95, and 2003. pFUnit — unit testing framework for Fortran, modeled after JUnit == Documentation and code analysis tools == FORD — automatic documentation generator for modern Fortran projects SQuORE — software quality and management platform with code analysis support Understand — static analysis and code comprehension tool for large Fortran projects

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  Synaptic transistor

  A synaptic transistor is an electrical device that can learn in ways similar to a neural synapse. It optimizes its own properties for the functions it has carried out in the past. The device mimics the behavior of the property of neurons called spike-timing-dependent plasticity, or STDP. == Structure == Its structure is similar to that of a field effect transistor, where an ionic liquid takes the place of the gate insulating layer between the gate electrode and the conducting channel. That channel is composed of samarium nickelate (SmNiO3, or SNO) rather than the field effect transistor's doped silicon. == Function == A synaptic transistor has a traditional immediate response whose amount of current that passes between the source and drain contacts varies with voltage applied to the gate electrode. It also produces a much slower learned response such that the conductivity of the SNO layer varies in response to the transistor's STDP history, essentially by shuttling oxygen ions between the SNO and the ionic liquid. The analog of strengthening a synapse is to increase the SNO's conductivity, which essentially increases gain. Similarly, weakening a synapse is analogous to decreasing the SNO's conductivity, lowering the gain. The input and output of the synaptic transistor are continuous analog values, rather than digital on-off signals. While the physical structure of the device has the potential to learn from history, it contains no way to bias the transistor to control the memory effect. An external supervisory circuit converts the time delay between input and output into a voltage applied to the ionic liquid that either drives ions into the SNO or removes them. A network of such devices can learn particular responses to "sensory inputs", with those responses being learned through experience rather than explicitly programmed.

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  Learning classifier system

  Learning classifier systems, or LCS, are a paradigm of rule-based machine learning methods that combine a discovery component (e.g. typically a genetic algorithm in evolutionary computation) with a learning component (performing either supervised learning, reinforcement learning, or unsupervised learning). Learning classifier systems seek to identify a set of context-dependent rules that collectively store and apply knowledge in a piecewise manner in order to make predictions (e.g. behavior modeling, classification, data mining, regression, function approximation, or game strategy). This approach allows complex solution spaces to be broken up into smaller, simpler parts for the reinforcement learning that is inside artificial intelligence research. The founding concepts behind learning classifier systems came from attempts to model complex adaptive systems, using rule-based agents to form an artificial cognitive system (i.e. artificial intelligence). == Methodology == The architecture and components of a given learning classifier system can be quite variable. It is useful to think of an LCS as a machine consisting of several interacting components. Components may be added or removed, or existing components modified/exchanged to suit the demands of a given problem domain (like algorithmic building blocks) or to make the algorithm flexible enough to function in many different problem domains. As a result, the LCS paradigm can be flexibly applied to many problem domains that call for machine learning. The major divisions among LCS implementations are as follows: (1) Michigan-style architecture vs. Pittsburgh-style architecture, (2) reinforcement learning vs. supervised learning, (3) incremental learning vs. batch learning, (4) online learning vs. offline learning, (5) strength-based fitness vs. accuracy-based fitness, and (6) complete action mapping vs best action mapping. These divisions are not necessarily mutually exclusive. For example, XCS, the best known and best studied LCS algorithm, is Michigan-style, was designed for reinforcement learning but can also perform supervised learning, applies incremental learning that can be either online or offline, applies accuracy-based fitness, and seeks to generate a complete action mapping. === Elements of a generic LCS algorithm === Keeping in mind that LCS is a paradigm for genetic-based machine learning rather than a specific method, the following outlines key elements of a generic, modern (i.e. post-XCS) LCS algorithm. For simplicity let us focus on Michigan-style architecture with supervised learning. See the illustrations on the right laying out the sequential steps involved in this type of generic LCS. ==== Environment ==== The environment is the source of data upon which an LCS learns. It can be an offline, finite training dataset (characteristic of a data mining, classification, or regression problem), or an online sequential stream of live training instances. Each training instance is assumed to include some number of features (also referred to as attributes, or independent variables), and a single endpoint of interest (also referred to as the class, action, phenotype, prediction, or dependent variable). Part of LCS learning can involve feature selection, therefore not all of the features in the training data need to be informative. The set of feature values of an instance is commonly referred to as the state. For simplicity let's assume an example problem domain with Boolean/binary features and a Boolean/binary class. For Michigan-style systems, one instance from the environment is trained on each learning cycle (i.e. incremental learning). Pittsburgh-style systems perform batch learning, where rule sets are evaluated in each iteration over much or all of the training data. ==== Rule/classifier/population ==== A rule is a context dependent relationship between state values and some prediction. Rules typically take the form of an {IF:THEN} expression, (e.g. {IF 'condition' THEN 'action'}, or as a more specific example, {IF 'red' AND 'octagon' THEN 'stop-sign'}). A critical concept in LCS and rule-based machine learning alike, is that an individual rule is not in itself a model, since the rule is only applicable when its condition is satisfied. Think of a rule as a "local-model" of the solution space. Rules can be represented in many different ways to handle different data types (e.g. binary, discrete-valued, ordinal, continuous-valued). Given binary data LCS traditionally applies a ternary rule representation (i.e. rules can include either a 0, 1, or '#' for each feature in the data). The 'don't care' symbol (i.e. '#') serves as a wild card within a rule's condition allowing rules, and the system as a whole to generalize relationships between features and the target endpoint to be predicted. Consider the following rule (#1###0 ~ 1) (i.e. condition ~ action). This rule can be interpreted as: IF the second feature = 1 AND the sixth feature = 0 THEN the class prediction = 1. We would say that the second and sixth features were specified in this rule, while the others were generalized. This rule, and the corresponding prediction are only applicable to an instance when the condition of the rule is satisfied by the instance. This is more commonly referred to as matching. In Michigan-style LCS, each rule has its own fitness, as well as a number of other rule-parameters associated with it that can describe the number of copies of that rule that exist (i.e. the numerosity), the age of the rule, its accuracy, or the accuracy of its reward predictions, and other descriptive or experiential statistics. A rule along with its parameters is often referred to as a classifier. In Michigan-style systems, classifiers are contained within a population [P] that has a user defined maximum number of classifiers. Unlike most stochastic search algorithms (e.g. evolutionary algorithms), LCS populations start out empty (i.e. there is no need to randomly initialize a rule population). Classifiers will instead be initially introduced to the population with a covering mechanism. In any LCS, the trained model is a set of rules/classifiers, rather than any single rule/classifier. In Michigan-style LCS, the entire trained (and optionally, compacted) classifier population forms the prediction model. ==== Matching ==== One of the most critical and often time-consuming elements of an LCS is the matching process. The first step in an LCS learning cycle takes a single training instance from the environment and passes it to [P] where matching takes place. In step two, every rule in [P] is now compared to the training instance to see which rules match (i.e. are contextually relevant to the current instance). In step three, any matching rules are moved to a match set [M]. A rule matches a training instance if all feature values specified in the rule condition are equivalent to the corresponding feature value in the training instance. For example, assuming the training instance is (001001 ~ 0), these rules would match: (###0## ~ 0), (00###1 ~ 0), (#01001 ~ 1), but these rules would not (1##### ~ 0), (000##1 ~ 0), (#0#1#0 ~ 1). Notice that in matching, the endpoint/action specified by the rule is not taken into consideration. As a result, the match set may contain classifiers that propose conflicting actions. In the fourth step, since we are performing supervised learning, [M] is divided into a correct set [C] and an incorrect set [I]. A matching rule goes into the correct set if it proposes the correct action (based on the known action of the training instance), otherwise it goes into [I]. In reinforcement learning LCS, an action set [A] would be formed here instead, since the correct action is not known. ==== Covering ==== At this point in the learning cycle, if no classifiers made it into either [M] or [C] (as would be the case when the population starts off empty), the covering mechanism is applied (fifth step). Covering is a form of online smart population initialization. Covering randomly generates a rule that matches the current training instance (and in the case of supervised learning, that rule is also generated with the correct action. Assuming the training instance is (001001 ~ 0), covering might generate any of the following rules: (#0#0## ~ 0), (001001 ~ 0), (#010## ~ 0). Covering not only ensures that each learning cycle there is at least one correct, matching rule in [C], but that any rule initialized into the population will match at least one training instance. This prevents LCS from exploring the search space of rules that do not match any training instances. ==== Parameter updates/credit assignment/learning ==== In the sixth step, the rule parameters of any rule in [M] are updated to reflect the new experience gained from the current training instance. Depending on the LCS algorithm, a number of updates can take place at this step. For supervised learning, we can simply update the accuracy/error of a

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